Publications

2022 Publications
Adeagbo, O. A., Seeley, J., Gumede, D., Xulu, S., Dlamini, N., Luthuli, M., Dreyer, J., Herbst, C., Cowan, F., Chimbindi, N., Hatzold, K., Okesola, N., Johnson, C., Harling, G., Subedar, H., Sherr, L., McGrath, N., Corbett, L., & Shahmanesh, M. (2022). Process evaluation of peer-to-peer delivery of HIV self-testing and sexual health information to support HIV prevention among youth in rural KwaZulu-Natal, South Africa: Qualitative analysis. BMJ Open, 12(2), e048780. https://doi.org/10.1136/bmjopen-2021-048780
Amuge, P., Lugemwa, A., Wynne, B., Mujuru, H. A., Violari, A., Kityo, C. M., Archary, M., Variava, E., White, E., Turner, R. M., Shakeshaft, C., Ali, S., Nathoo, K. J., Atwine, L., Liberty, A., Bbuye, D., Kaudha, E., Mngqibisa, R., Mosala, M., … Zuidewind, P. (2022). Once-daily dolutegravir-based antiretroviral therapy in infants and children living with HIV from age 4 weeks: Results from the below 14 kg cohort in the randomised ODYSSEY trial. The Lancet HIV, 9(9), e638–e648. https://doi.org/10.1016/S2352-3018(22)00163-1
Arsenault, C., Gage, A., Kim, M. K., Kapoor, N. R., Akweongo, P., Amponsah, F., Aryal, A., Asai, D., Awoonor-Williams, J. K., Ayele, W., Bedregal, P., Doubova, S. V., Dulal, M., Gadeka, D. D., Gordon-Strachan, G., Mariam, D. H., Hensman, D., Joseph, J. P., Kaewkamjornchai, P., … Kruk, M. E. (2022). Covid-19 and resilience of healthcare systems in ten countries. Nature Medicine, 28(6), 1314–1324. https://doi.org/10.1038/s41591-022-01750-1
Baisley, K., Orne‐Gliemann, J., Larmarange, J., Plazy, M., Collier, D., Dreyer, J., Mngomezulu, T., Herbst, K., Hanekom, W., Dabis, F., Siedner, M. J., & Iwuji, C. (2022). Early HIV treatment and survival over six years of observation in the ANRS 12249 Treatment as Prevention Trial. HIV Medicine, hiv.13263. https://doi.org/10.1111/hiv.13263
Baiyegunhi, O. O., Mann, J., Khaba, T., Nkosi, T., Mbatha, A., Ogunshola, F., Chasara, C., Ismail, N., Ngubane, T., Jajbhay, I., Pansegrouw, J., Dong, K. L., Walker, B. D., Ndung’u, T., & Ndhlovu, Z. M. (2022). CD8 lymphocytes mitigate HIV-1 persistence in lymph node follicular helper T cells during hyperacute-treated infection. Nature Communications, 13(1), 4041. https://doi.org/10.1038/s41467-022-31692-8
Bengu, N., Mchunu, N., Mokhethi, S., Fillis, R., Cromhout, G., Lobenstein, J. van, Graza, Y., Kapongo, C., Chinniah, K., Bhoola, R., Adland, E., Puertas, M. C., Ndung’u, T., Martinez-Picado, J., Archary, M., & Goulder, P. J. R. (2022). Next-generation point-of-care testing in pediatric human immunodeficiency virus infection facilitates diagnosis and monitoring of treatment. Medicine, 101(27), e29228. https://doi.org/10.1097/MD.0000000000029228
Bernabe, K. J., Siedner, M., Tsai, A. C., Marconi, V. C., & Murphy, R. A. (2022). Detection of HIV virologic failure and switch to second-line therapy: A systematic review and meta-analysis of data from sub-Saharan Africa. Open Forum Infectious Diseases, ofac121. https://doi.org/10.1093/ofid/ofac121
Boeke, C. E., Khan, S., Walsh, F. J., Lejeune, C., Hettema, A., Spiegelman, D., Okello, V., & Bärnighausen, T. (2021). Longitudinal analysis of client appointment adherence under Universal Test and Treat strategy: A stepped‐wedge trial. HIV Medicine, 22(9), 854–859. https://doi.org/10.1111/hiv.13144
Bogart, L. M., Shazi, Z., MacCarthy, S., Mendoza-Graf, A., Wara, N. J., Zionts, D., Dube, N., Govere, S., & Bassett, I. V. (2022). Implementation of South Africa’s Central Chronic Medicine Dispensing and Distribution Program for HIV Treatment: A Qualitative Evaluation. AIDS and Behavior, 26(8), 2600–2612. https://doi.org/10.1007/s10461-022-03602-y
Bousmah, M.-Q., Iwuji, C., Okesola, N., Orne-Gliemann, J., Pillay, D., Dabis, F., Larmarange, J., & Boyer, S. (2022). Costs and economies of scale in repeated home-based HIV counselling and testing: Evidence from the ANRS 12249 treatment as prevention trial in South Africa. Social Science & Medicine, 305, 115068. https://doi.org/10.1016/j.socscimed.2022.115068
Cele, S., Karim, F., Lustig, G., San, J. E., Hermanus, T., Tegally, H., Snyman, J., Moyo-Gwete, T., Wilkinson, E., Bernstein, M., Khan, K., Hwa, S.-H., Tilles, S. W., Singh, L., Giandhari, J., Mthabela, N., Mazibuko, M., Ganga, Y., Gosnell, B. I., Karim SA, Hanekom W, Van Voorhis WC, Ndungâ U T; COMMIT-KZN Team, Lessells RJ, Moore PL, Moosa MS, de Oliveira T, Sigal A. (2022). SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape. Cell Host & Microbe, S1931312822000415. https://doi.org/10.1016/j.chom.2022.01.005
Chidumwa, G., Chimbindi, N., Herbst, C., Okeselo, N., Dreyer, J., Zuma, T., Smith, T., Molina, J.-M., Khoza, T., McGrath, N., Seeley, J., Pillay, D., Tanser, F., Harling, G., Sherr, L., Copas, A., Baisley, K., & Shahmanesh, M. (2022). Isisekelo Sempilo study protocol for the effectiveness of HIV prevention embedded in sexual health with or without peer navigator support (Thetha Nami) to reduce prevalence of transmissible HIV amongst adolescents and young adults in rural KwaZulu-Natal: A 2 × 2 factorial randomised controlled trial. BMC Public Health, 22(1), 454. https://doi.org/10.1186/s12889-022-12796-8
Chimbindi, N., & Shahmanesh, M. (2022). PrEP dispensing with HIV self-testing. The Lancet HIV, 9(7), e450–e451. https://doi.org/10.1016/S2352-3018(22)00171-0
Chimukuche, R., Ngwenya, N., Seeley, J., Nxumalo, P., Nxumalo, Z., Godongwana, M., Radebe, N., Myburgh, N., Adedini, S., & Cutland, C. (2022). Assessing Community Acceptance of Maternal Immunisation in Rural KwaZulu-Natal, South Africa: A Qualitative Investigation. Vaccines, 10(3), 415. https://doi.org/10.3390/vaccines10030415
Cowan, F. M., Machingura, F., Chabata, S. T., Ali, M. S., Busza, J., Steen, R., Desmond, N., Shahmanesh, M., Revill, P., Mpofu, A., Yekeye, R., Mugurungi, O., Phillips, A. N., & Hargreaves, J. R. (2022). Differentiated prevention and care to reduce the risk of HIV acquisition and transmission among female sex workers in Zimbabwe: Study protocol for the ‘AMETHIST’ cluster randomised trial. Trials, 23(1), 209. https://doi.org/10.1186/s13063-022-06119-w
Dzomba, A., Kim, H.-Y., Tomita, A., Vandormael, A., Govender, K., & Tanser, F. (2022). Predictors of migration in an HIV hyper-endemic rural South African community: Evidence from a population-based cohort (2005–2017). BMC Public Health, 22(1), 1141. https://doi.org/10.1186/s12889-022-13526-w
Fentress, M., Henwood, P. C., Maharaj, P., Mitha, M., Khan, D., Jackpersad, R., Pitcher, R., Redfern, A., Lopez Varela, E., van der Zalm, M. M., Wong, E. B., Palmer, M., & Grant, A. D. (2022). Thoracic ultrasound for TB diagnosis in adults and children. Public health action, 12(1), 3–6. https://doi.org/10.5588/pha.21.0072
Fernández-Luis, S., Lain, M. G., Serna-Pascual, M., Domínguez-Rodríguez, S., Kuhn, L., Liberty, A., Barnabas, S., Lopez-Varela, E., Otwombe, K., Danaviah, S., Nastouli, E., Palma, P., Cotugno, N., Spyer, M., Giannuzzi, V., Giaquinto, C., Violari, A., Cotton, M. F., Nhampossa, T., Klein, N., Behuhuma, O., Goulder, P … Maiga, A. (2022). Optimizing the World Health Organization algorithm for HIV vertical transmission risk assessment by adding maternal self-reported antiretroviral therapy adherence. BMC Public Health, 22(1), 1312. https://doi.org/10.1186/s12889-022-13543-9
Fisher, K. L., Moodley, D., Rajkumar-Bhugeloo, K., Baiyegunhi, O. O., Karim, F., Ndlovu, H., Ndung’u, T., & Marakalala, M. J. (2022). Elevated IP-10 at the protein and gene level associates with pulmonary TB. Frontiers in Cellular and Infection Microbiology, 12, 908144. https://doi.org/10.3389/fcimb.2022.908144
Floyd, S., Mulwa, S., Magut, F., Gourlay, A., Mthiyane, N., Kamire, V., Osindo, J., Otieno, M., Chimbindi, N., Ziraba, A., Phillips-Howard, P., Kwaro, D., Shahmanesh, M., & Birdthistle, I. (2022). DREAMS impact on HIV status knowledge and sexual risk among cohorts of young women in Kenya and South Africa. AIDS, 36(Supplement 1), S61–S73. https://doi.org/10.1097/QAD.0000000000003157
Gideon, H. P., Hughes, T. K., Tzouanas, C. N., Wadsworth, M. H., Tu, A. A., Gierahn, T. M., … Leslie, A., Behar, S.M., Bryson, B., Flynn, J.L., Fortune, S.M., Shalek, A. K. (2022). Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control. Immunity, S1074761322001753. https://doi.org/10.1016/j.immuni.2022.04.004
Gourlay, A. J., Birdthistle, I., Mulwa, S., Mthiyane, N. T., Magut, F., Chimbindi, N., Ziraba, A., Otieno, M., Kwaro, D., Osindo, J., Kamire, V., Shahmanesh, M., & Floyd, S. (2022). Awareness and uptake of the Determined, Resilient, Empowered, AIDS-free, Mentored and Safe HIV prevention package over time among population-based cohorts of young women in Kenya and South Africa. AIDS, 36(Supplement 1), S27–S38. https://doi.org/10.1097/QAD.0000000000003120
Gourlay, A., Floyd, S., Magut, F., Mulwa, S., Mthiyane, N., Wambiya, E., Otieno, M., Kamire, V., Osindo, J., Chimbindi, N., Ziraba, A., Kwaro, D., Shahmanesh, M., & Birdthistle, I. (2022). Impact of the DREAMS Partnership on social support and general self-efficacy among adolescent girls and young women: Causal analysis of population-based cohorts in Kenya and South Africa. BMJ Global Health, 7(3), e006965. https://doi.org/10.1136/bmjgh-2021-006965
Govere-Hwenje, S., Jarolimova, J., Yan, J., Khumalo, A., Zondi, G., Ngcobo, M., Wara, N. J., Zionts, D., Bogart, L. M., Parker, R. A., & Bassett, I. V. (2022). Willingness to accept Covid-19 vaccination among people living with HIV in a high HIV prevalence community. BMC Public Health, 22(1), 1239. https://doi.org/10.1186/s12889-022-13623-w
Greaney, A. J., Eguia, R. T., Starr, T. N., Khan, K., Franko, N., Logue, J. K., Lord, S. M., Speake, C., Chu, H. Y., Sigal, A., & Bloom, J. D. (2022). The SARS-CoV-2 Delta variant induces an antibody response largely focused on class 1 and 2 antibody epitopes. PLOS Pathogens, 18(6), e1010592. https://doi.org/10.1371/journal.ppat.1010592
Greaney, A. J., Starr, T. N., Eguia, R. T., Loes, A. N., Khan, K., Karim, F., Cele, S., Bowen, J. E., Logue, J. K., Corti, D., Veesler, D., Chu, H. Y., Sigal, A., & Bloom, J. D. (2022). A SARS-CoV-2 variant elicits an antibody response with a shifted immunodominance hierarchy. PLOS Pathogens, 18(2), e1010248. https://doi.org/10.1371/journal.ppat.1010248
Inghels, M., Kim, H.-Y., Mathenjwa, T., Shahmanesh, M., Seeley, J., Wyke, S., McGrath, N., Sartorius, B., Yapa, H. M., Dobra, A., Bärnighausen, T., & Tanser, F. (2022). Can a conditional financial incentive (CFI) reduce socio-demographic inequalities in home-based HIV testing uptake? A secondary analysis of the HITS clinical trial intervention in rural South Africa. Social Science & Medicine, 311, 115305. https://doi.org/10.1016/j.socscimed.2022.115305
Iwuji, C., Pillay, D., Shamu, P., Murire, M., Nzenze, S., Cox, L.-A., & Mullick, S. (2022). A systematic review of antimicrobial resistance in Neisseria gonorrhoeae and Mycoplasma genitalium in sub-Saharan Africa. Journal of Antimicrobial Chemotherapy, dkac159. https://doi.org/10.1093/jac/dkac159
Jahagirdar, D., Walters, M. K., Novotney, A., Brewer, E. D., Frank, T. D., Carter, A., Biehl, M. H., Abbastabar, H., Abhilash, E. S., Abu-Gharbieh, E., Abu-Raddad, L. J., Adekanmbi, V., Adeyinka, D. A., Adnani, Q. E. S., Afzal, S., Aghababaei, S., Ahinkorah, B. O., Ahmad, S., Ahmadi, K., … Kyu, H. H. (2021). Global, regional, and national sex-specific burden and control of the HIV epidemic, 1990–2019, for 204 countries and territories: The Global Burden of Diseases Study 2019. The Lancet HIV, 8(10), e633–e651. https://doi.org/10.1016/S2352-3018(21)00152-1
Kampiire, L., Archary, M., Frigati, L., Penazatto, M., & Brusamento, S. (2022). Immunization for Children Living With HIV: A Scoping Review. Journal of the Pediatric Infectious Diseases Society, piab119. https://doi.org/10.1093/jpids/piab119
Keeton, R., Tincho, M. B., Ngomti, A., Baguma, R., Benede, N., Suzuki, A., Khan, K., Cele, S., Bernstein, M., Karim, F., Madzorera, S. V., Moyo-Gwete, T., Mennen, M., Skelem, S., Adriaanse, M., Mutithu, D., Aremu, O., Stek, C., du Bruyn, E., … Riou, C. (2022). T cell responses to SARS-CoV-2 spike cross-recognize Omicron. Nature. https://doi.org/10.1038/s41586-022-04460-3
Kemp, S. A., Charles, O. J., Derache, A., Smidt, W., Martin, D. P., Iwuji, C., Adamson, J., Govender, K., de Oliveira, T., Dabis, F., Pillay, D., Goldstein, R. A., & Gupta, R. K. (2022). HIV-1 Evolutionary Dynamics under Nonsuppressive Antiretroviral Therapy. MBio, e00269-22. https://doi.org/10.1128/mbio.00269-22
Khan, K., Karim, F., Cele, S., Reedoy, K., San, J. E., Lustig, G., Tegally, H., Rosenberg, Y., Bernstein, M., Jule, Z., Ganga, Y., Ngcobo, N., Mazibuko, M., Mthabela, N., Mhlane, Z., Mbatha, N., Miya, Y., Giandhari, J., Ramphal, Y., … Sigal, A. (2022). Omicron infection enhances Delta antibody immunity in vaccinated persons. Nature. https://doi.org/10.1038/s41586-022-04830-x
Khan, K., Lustig, G., Bernstein, M., Archary, D., Cele, S., Karim, F., Smith, M., Ganga, Y., Jule, Z., Reedoy, K., Miya, Y., Mthabela, N., Magula, N. P., Lessells, R., de Oliveira, T., Gosnell, B. I., Abdool Karim, S., Garrett, N., Hanekom, W., … Ndhlovu, Z. (2022). Immunogenicity of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and Ad26.CoV2.S Vaccination in People Living With Human Immunodeficiency Virus (HIV). Clinical Infectious Diseases, 75(1), e857–e864. https://doi.org/10.1093/cid/ciab1008
Kim, H.-Y., Cuadros, D., Wilkinson, E., Junqueira, D. M., Oliveira, T. de, & Tanser, F. (2022). The geography and inter-community configuration of new sexual partnership formation in a rural South African population over fourteen years (2003–2016). PLOS Global Public Health, 2(3), e0000055. https://doi.org/10.1371/journal.pgph.0000055
Kruse, G., Zulu, T., Ngubane, H., Reddy, K., Siedner, M., Rigotti, N. A., Seeley, J., Ngwenya, N., & Wong, E. (2022). The ethics of conducting observational tobacco research without providing treatment to people who use tobacco: A case example from South Africa. BMJ Global Health, 7(7), e009732. https://doi.org/10.1136/bmjgh-2022-009732
Luthuli, M., Ngwenya, N., Gumede, D., Gunda, R., Gareta, D., Koole, O., Siedner, M. J., Wong, E. B., & Seeley, J. (2022). Participant recall and understandings of information on biobanking and future genomic research: Experiences from a multi-disease community-based health screening and biobank platform in rural South Africa. BMC Medical Ethics, 23(1), 43. https://doi.org/10.1186/s12910-022-00782-z
Mahlobo, B., Laher, F., Smidt, W., Ogunshola, F., Khaba, T., Nkosi, T., Mbatha, A., Ngubane, T., Dong, K., Jajbhay, I., Pansegrouw, J., & Ndhlovu, Z. M. (2022). The impact of HIV infection on the frequencies, function, spatial localization and heterogeneity of T follicular regulatory cells (TFRs) within human lymph nodes. BMC Immunology, 23(1), 34. https://doi.org/10.1186/s12865-022-00508-1
Marcus, M. E., Manne-Goehler, J., Theilmann, M., Farzadfar, F., Moghaddam, S. S., Keykhaei, M., Hajebi, A., Tschida, S., Lemp, J. M., Aryal, K. K., Dunn, M., Houehanou, C., Bahendeka, S., Rohloff, P., Atun, R., Bärnighausen, T. W., Geldsetzer, P., Ramirez-Zea, M., Chopra, V., … Flood, D. (2022). Use of statins for the prevention of cardiovascular disease in 41 low-income and middle-income countries: A cross-sectional study of nationally representative, individual-level data. The Lancet Global Health, 10(3), e369–e379. https://doi.org/10.1016/S2214-109X(21)00551-9
Martin, D. P., Lytras, S., Lucaci, A. G., Maier, W., Grüning, B., Shank, S. D., Weaver, S., MacLean, O. A., Orton, R. J., Lemey, P., Boni, M. F., Tegally, H., Harkins, G. W., Scheepers, C., Bhiman, J. N., Everatt, J., Amoako, D. G., San, J. E., Giandhari, J., … Kosakovsky Pond, S. L. (2022). Selection analysis identifies clusters of unusual mutational changes in Omicron lineage BA.1 that likely impact Spike function. Molecular Biology and Evolution, msac061. https://doi.org/10.1093/molbev/msac061
Matimba, A., Ali, S., Littler, K., Madden, E., Marshall, P., McCurdy, S., Nembaware, V., Rodriguez, L., Seeley, J., Tindana, P., Yakubu, A., & de Vries, J. (2022). Guideline for feedback of individual genetic research findings for genomics research in Africa. BMJ Global Health, 7(1), e007184. https://doi.org/10.1136/bmjgh-2021-007184
McCaffrey, E. F., Donato, M., Keren, L., Chen, Z., Delmastro, A., Fitzpatrick, M. B., Gupta, S., Greenwald, N. F., Baranski, A., Graf, W., Kumar, R., Bosse, M., Fullaway, C. C., Ramdial, P. K., Forgó, E., Jojic, V., Van Valen, D., Mehra, S., Khader, S. A., Bendall SC, van de Rijn M, Kalman D, Kaushal D, Hunter RL, Banaei N, Steyn AJC, Khatri P, Angelo M. (2022). The immunoregulatory landscape of human tuberculosis granulomas. Nature Immunology. https://doi.org/10.1038/s41590-021-01121-x
McCreesh, N., Karat, A. S., Govender, I., Baisley, K., Diaconu, K., Yates, T. A., Houben, R. M., Kielmann, K., Grant, A. D., & White, R. (2022). Estimating the contribution of transmission in primary healthcare clinics to community-wide TB disease incidence, and the impact of infection prevention and control interventions, in KwaZulu-Natal, South Africa. BMJ Global Health, 7(4), e007136. https://doi.org/10.1136/bmjgh-2021-007136
McCreesh, N., Mohlamonyane, M., Edwards, A., Olivier, S., Dikgale, K., Dayi, N., Gareta, D., Wood, R., Grant, A. D., White, R. G., & Middelkoop, K. (2022). Improving Estimates of Social Contact Patterns for Airborne Transmission of Respiratory Pathogens. Emerging Infectious Diseases, 28(10), 2016–2026. https://doi.org/10.3201/eid2810.212567
Meng, B., Abdullahi, A., Ferreira, I. A. T. M., Goonawardane, N., Saito, A., Kimura, I., Yamasoba, D., Gerber, P. P., Fatihi, S., Rathore, S., Zepeda, S. K., Papa, G., Kemp, S. A., Ikeda, T., Toyoda, M., Tan, T. S., Kuramochi, J., Mitsunaga, S., Ueno, T., … Gupta, R. K. (2022). Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts tropism and fusogenicity. Nature. https://doi.org/10.1038/s41586-022-04474-x
Miall, A., McLellan, R., Dong, K., Ndung’u, T., Saberi, P., Sauceda, J. A., & Dubé, K. (2022). Bringing social context into global biomedical HIV cure-related research: An urgent call to action. Journal of Virus Eradication, 8(1), 100062. https://doi.org/10.1016/j.jve.2021.100062
Millar, J. R., Bengu, N., Vieira, V. A., Adland, E., Roider, J., Muenchhoff, M., Fillis, R., Sprenger, K., Ntlantsana, V., Fatti, I., Archary, M., Groll, A., Ismail, N., García-Guerrero, M. C., Matthews, P. C., Ndung’u, T., Puertas, M. C., Martinez-Picado, J., & Goulder, P. (2021). Early initiation of antiretroviral therapy following in utero HIV infection is associated with low viral reservoirs but other factors determine viral rebound. The Journal of Infectious Diseases, 224(11), 1925–1934. https://doi.org/10.1093/infdis/jiab223
Moyano, A., Ndungu, T., & Mann, J. K. (2022). Determinants of natural HIV-1 control. Aids Reviews, 0(0), 7765. https://doi.org/10.24875/AIDSRev.21000048
Mthiyane, N., Baisley, K., Chimbindi, N., Zuma, T., Okesola, N., Dreyer, J., Herbst, C., Smit, T., Danaviah, S., McGrath, N., Harling, G., Sherr, L., Seeley, J., Floyd, S., Birdthistle, I., & Shahmanesh, M. (2022). The association of exposure to DREAMS on sexually acquiring or transmitting HIV amongst adolescent girls and young women living in rural South Africa. AIDS, 36(Supplement 1), S39–S49. https://doi.org/10.1097/QAD.0000000000003156
Mvaya, L., Khaba, T., Lakudzala, A. E., Nkosi, T., Jambo, N., Kadwala, I., Kankwatira, A., Patel, P. D., Gordon, M. A., Nyirenda, T. S., Jambo, K. C., & Ndhlovu, Z. M. (2022). Differential localization and limited cytotoxic potential of duodenal CD8+ T cells. JCI Insight, 7(3), e154195. https://doi.org/10.1172/jci.insight.154195
Nachega, J. B., Sam-Agudu, N. A., Machekano, R. N., Rabie, H., van der Zalm, M. M., Redfern, A., Dramowski, A., O’Connell, N., Pipo, M. T., Tshilanda, M. B., Byamungu, L. N., Masekela, R., Jeena, P. M., Pillay, A., Gachuno, O. W., Kinuthia, J., Ishoso, D. K., Amoako, E., Agyare, E., … Adirieje, C. (2022). Assessment of Clinical Outcomes Among Children and Adolescents Hospitalized With COVID-19 in 6 Sub-Saharan African Countries. JAMA Pediatrics, 176(3), e216436. https://doi.org/10.1001/jamapediatrics.2021.6436
Negin, J., & Seeley, J. (2021). Incidence data do not count everyone. The Lancet HIV, 8(10), e603. https://doi.org/10.1016/S2352-3018(21)00243-5  
Nkosi, B., Seeley, J., Chimbindi, N., Zuma, T., Kelley, M., & Shahmanesh, M. (2022). Putting research ethics in context: Rethinking vulnerability and agency within a research ethics case study on HIV prevention for young girls in South Africa. SSM - Qualitative Research in Health, 2, 100081. https://doi.org/10.1016/j.ssmqr.2022.100081
Nkosi, T., Chasara, C., Papadopoulos, A. O., Nguni, T. L., Karim, F., Moosa, M.-Y. S., Gazy, I., Jambo, K., COMMIT-KZN, Hanekom, W., Sigal, A., & Ndhlovu, Z. M. (2022). Unsuppressed HIV infection impairs T cell responses to SARS-CoV-2 infection and abrogates T cell cross-recognition. ELife, 11, e78374. https://doi.org/10.7554/eLife.78374
O’Donnell, M. R., Padayatchi, N., Wolf, A., Zelnick, J., Daftary, A., Orrell, C., Nimmo, C., Baldwin, M., Boodhram, R., Maharaj, B., Amico, K. R., Naidoo, K., & Friedland, G. (2022). Bedaquiline adherence measured by electronic dose monitoring predicts clinical outcomes in the treatment of patients with multidrug-resistant tuberculosis and HIV/AIDS. JAIDS Journal of Acquired Immune Deficiency Syndromes. https://doi.org/10.1097/QAI.0000000000002940
Ogunshola, F. J., Smidt, W., Naidoo, A. F., Nkosi, T., Ngubane, T., Khaba, T., Baiyegunhi, O. O., Mahlobo, B., Rasehlo, S., Ngema, N., Jajbhay, I., Dong, K. L., Ramsuran, V., Pansegrouw, J., Ndung’u, T., Walker, B. D., Oliveria, T. de, & Ndhlovu, Z. M. (2022). Hypermethylation at the CXCR5 gene locus limits trafficking potential of CD8+ T cells into B-cell follicles during HIV-1 infection. Blood Advances, 6(6), 1904–1916. https://doi.org/10.1182/bloodadvances.2021006001
Orievulu, K. S., Ayeb-Karlsson, S., Ngema, S., Baisley, K., Tanser, F., Ngwenya, N., Seeley, J., Hanekom, W., Herbst, K., Kniveton, D., & Iwuji, C. C. (2022). Exploring linkages between drought and HIV treatment adherence in Africa: A systematic review. The Lancet Planetary Health, 6(4), e359–e370. https://doi.org/10.1016/S2542-5196(22)00016-X
Papadopoulos, A. O., & Ndhlovu, Z. M. (2022). Editing naive CD4+ T cells. Nature methods, 19(1), 36–37. https://doi.org/10.1038/s41592-021-01332-y
Roberts, D. A., Cuadros, D., Vandormael, A., Gareta, D., Barnabas, R. V., Herbst, K., Tanser, F., & Akullian, A. (2022). Predicting the risk of HIV-1 acquisition in rural South Africa using geospatial data. Clinical Infectious Diseases, ciac069. https://doi.org/10.1093/cid/ciac069  
Schaefer, R., Amparo da Costa Leite, P. H., Silva, R., Abdool Karim, Q., Akolo, C., Cáceres, C. F., Dourado, I., Green, K., Hettema, A., Hoornenborg, E., Jana, S., Kerschberger, B., Mahler, H., Matse, S., McManus, H., Molina, J.-M., Reza-Paul, S., Azwa, I., Shahmanesh, M., … Dalal, S. (2022). Kidney function in tenofovir disoproxil fumarate-based oral pre-exposure prophylaxis users: A systematic review and meta-analysis of published literature and a multi-country meta-analysis of individual participant data. The Lancet HIV, 9(4), e242–e253. https://doi.org/10.1016/S2352-3018(22)00004-2
Scheepers, C., Everatt, J., Amoako, D. G., Tegally, H., Wibmer, C. K., Mnguni, A., Ismail, A., Mahlangu, B., Lambson, B. E., Martin, D. P., Wilkinson, E., San, J. E., Giandhari, J., Manamela, N., Ntuli, N., Kgagudi, P., Cele, S., Richardson, S. I., Pillay, S., … Bhiman, J. N. (2022). Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage. Nature Communications, 13(1), 1976. https://doi.org/10.1038/s41467-022-29579-9
Seaman, M. S., Siedner, M. J., Boucau, J., Lavine, C. L., Ghantous, F., Liew, M. Y., Mathews, J., Singh, A., Marino, C., Regan, J., Uddin, R., Choudhary, M. C., Flynn, J. P., Chen, G., Stuckwisch, A. M., Lipiner, T., Kittilson, A., Melberg, M., Gilbert, R. F., … Lemieux, J. E. (2022). Vaccine Breakthrough Infection with the SARS-CoV-2 Delta or Omicron (BA.1) Variant Leads to Distinct Profiles of Neutralizing Antibody Responses [Preprint]. Infectious Diseases. https://doi.org/10.1101/2022.03.02.22271731
Sigal, A. (2022). Milder disease with Omicron: Is it the virus or the pre-existing immunity? Nature Reviews Immunology. https://doi.org/10.1038/s41577-022-00678-4
Sigal, A., Milo, R., & Jassat, W. (2022). Estimating disease severity of Omicron and Delta SARS-CoV-2 infections. Nature Reviews Immunology. https://doi.org/10.1038/s41577-022-00720-5
Sithole, N., Koole, O., Sausi, K., Krows, M., Schaafsma, T., Van Heerden, A., Shahmanesh, M., van Rooyen, H., Celum, C., Barnabas, R. V., & Shapiro, A. E. (2022). Secondary Distribution of HIV Self-Testing Kits to Social and Sexual Networks of PLWH in KwaZulu-Natal, South Africa. A Brief Report. Frontiers in Public Health, 10, 855625. https://doi.org/10.3389/fpubh.2022.855625
The CRyPTIC Consortium. (2022). Epidemiological cutoff values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis. European Respiratory Journal, 2200239. https://doi.org/10.1183/13993003.00239-2022
Turkova, A., Waalewijn, H., Chan, M. K., Bollen, P. D. J., Bwakura-Dangarembizi, M. F., Kekitiinwa, A. R., Cotton, M. F., Lugemwa, A., Variava, E., Ahimbisibwe, G. M., Srirompotong, U., Mumbiro, V., Amuge, P., Zuidewind, P., Ali, S., Kityo, C. M., Archary, M., Ferrand, R. A., Violari, A., … Zuidewind, P. (2022). Dolutegravir twice-daily dosing in children with HIV-associated tuberculosis: A pharmacokinetic and safety study within the open-label, multicentre, randomised, non-inferiority ODYSSEY trial. The Lancet HIV, 9(9), e627–e637. https://doi.org/10.1016/S2352-3018(22)00160-6
van Empel, E., De Vlieg, R. A., Harling, G., Marcus, M. E., Kahn, K., Bärnighausen, T. W., Montana, L., Choko, A. T., & Manne-Goehler, J. (2022). Reaching for the ‘first 95’: A cross-country analysis of HIV self-testing in nine countries in sub-Saharan Africa. AIDS, 36(2), 297–304. https://doi.org/10.1097/QAD.0000000000003106
Walker, N., Karim, F., Moosa, M., Moodley, S., Mazibuko, M., Khan, K., Sterling, T., van der Heijden, Y., Grant, A., Elkington, P., Pym, A., & Leslie, A. (2022). Elevated Plasma Matrix Metalloproteinase-8 associates with Sputum Culture Positivity in Pulmonary Tuberculosis. The Journal of Infectious Diseases, jiac160. https://doi.org/10.1093/infdis/jiac160
Walker, T. M., Miotto, P., Köser, C. U., Fowler, P. W., Knaggs, J., Iqbal, Z., Hunt, M., Chindelevitch, L., Farhat, M. R., Cirillo, D. M., Comas, I., Posey, J., Omar, S. V., Peto, T. E., Suresh, A., Uplekar, S., Laurent, S., Colman, R. E., Nathanson, C.-M., … Puyen, Z. M. (2022). The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. The Lancet Microbe, 3(4), e265–e273. https://doi.org/10.1016/S2666-5247(21)00301-3
2021 Publications
Adeagbo, O., & Naidoo, K. (2021). Engaging the ‘Missing Men’ in the HIV Treatment Cascade: Creating a Tailored Intervention to Improve Men’s Uptake of HIV Care Services in Rural South Africa: A Study Protocol. International Journal of Environmental Research and Public Health, 18(7), 3709. https://doi.org/10.3390/ijerph18073709
Adriano Vieira, V., Adland, E., Malone, D. F. G., Martin, M. P., Groll, A., Ansari, M. A., Garcia-Guerrero, M. C., Puertas, M. C., Muenchhoff, M., Guash, C. F., Brander, C., Martinez-Picado, J., Bamford, A., Tudor-Williams, G., Ndung’u, T., Walker, B. D., Ramsuran, V., Frater, J., Jooste, P., … Goulder, P. J. R. (2021). An HLA-I signature favouring KIR-educated Natural Killer cells mediates immune control of HIV in children and contrasts with the HLA-B-restricted CD8+ T-cell-mediated immune control in adults. PLOS Pathogens, 17(11), e1010090. https://doi.org/10.1371/journal.ppat.1010090
Akullian, A., Vandormael, A., Miller, J.C., Bershteyn, A., Wenger, E., Cuadros, D., Gareta, D., Bärnighausen, T., Herbst, K., Tanser, F., (2021). Large age shifts in HIV-1 incidence patterns in KwaZulu-Natal, South Africa. Proc Natl Acad Sci USA, 118, e2013164118. https://doi.org/10.1073/pnas.2013164118
Asowata, O. E., Singh, A., Ngoepe, A., Herbert, N., Fardoos, R., Reddy, K., Zungu, Y., Nene, F., Mthabela, N., Ramjit, D., Karim, F., Govender, K., Ndung’u, T., Porterfield, J. Z., Adamson, J. H., Madela, F. G., Manzini, V. T., Anderson, F., Leslie, A., & Kløverpris, H. N. (2021). Irreversible depletion of intestinal CD4+ T-cells is associated with T-cell activation during chronic HIV infection. JCI Insighthttps://doi.org/10.1172/jci.insight.146162
Benson, P., Litovsky, S., Steyn, A. C., Margaroli, C., Iriabho, E., & Anderson, P. (2021). Use of telepathology to facilitate COVID-19 research and education through an online COVID-19 autopsy biorepository. Journal of Pathology Informatics, 12(1), 48. https://doi.org/10.4103/jpi.jpi_15_21
Bernays, S., Lanyon, C., Tumwesige, E., Aswiime, A., Ngwenya, N., Dlamini, V., Shahmanesh, M., Seeley, J., (2021). ‘This is what is going to help me’: Developing a co-designed and theoretically informed harm reduction intervention for mobile youth in South Africa and Uganda. Global Public Health, 1–14. https://doi.org/10.1080/17441692.2021.1953105
Birdthistle, I., Carter, D. J., Mthiyane, N. T., Orindi, B. O., Muuo, S., Chimbindi, N., Ziraba, A., Shahmanesh, M., Baisley, K., & Floyd, S. (2021). Early impact of the DREAMS partnership on young women’s knowledge of their HIV status: Causal analysis of population-based surveys in Kenya and South Africa. Journal of Epidemiology and Community Health, jech-2020-216042. https://doi.org/10.1136/jech-2020-216042
Bor, J., Fischer, C., Modi, M., Richman, B., Kinker, C., King, R., Calabrese, S. K., Mokhele, I., Sineke, T., Zuma, T., Rosen, S., Bärnighausen, T., Mayer, K. H., & Onoya, D. (2021). Changing Knowledge and Attitudes Towards HIV Treatment-as-Prevention and “Undetectable = Untransmittable”: A Systematic Review. AIDS and Behavior, 25(12), 4209–4224. https://doi.org/10.1007/s10461-021-03296-8
Bozzani, F. M., Diaconu, K., Gomez, G. B., Karat, A. S., Kielmann, K., Grant, A. D., & Vassall, A. (2021). Using System Dynamics Modelling to Estimate the Costs of Relaxing Health System Constraints: A Case Study of Tuberculosis Prevention and Control Interventions in South Africa. Health Policy and Planning, czab155. https://doi.org/10.1093/heapol/czab155
Brinkmann, B., Davies, J. I., Witham, M. D., Harling, G., Bärnighausen, T., Bountogo, M., Siedner, M. J., Ouermi, L., Junghanns, J., Boubacar, C., Sié, A., Payne, C. F., & Kohler, I. V. (2021). Impairment in Activities of Daily Living and unmet need for care among older adults: A population-based study from Burkina Faso. The Journals of Gerontology: Series B, gbab041. https://doi.org/10.1093/geronb/gbab041
Bulstra, C. A., Reddy, C. L., Atun, R., Bärnighausen, T., & Hontelez, J. A. C. (2021). Impact of the COVID-19-related global recession on the financing of the global HIV response. AIDS, Publish Ahead of Print. https://doi.org/10.1097/QAD.0000000000002872
Cai, Y., Jaecklein, E., Mackenzie, J. S., Papavinasasundaram, K., Olive, A. J., Chen, X., Steyn, A. J. C., & Sassetti, C. M. (2021). Host immunity increases Mycobacterium tuberculosis reliance on cytochrome bd oxidase. PLOS Pathogens, 17(7), e1008911. https://doi.org/10.1371/journal.ppat.1008911
Cai, Y., Jaecklein, E., Mackenzie, J. S., Papavinasasundaram, K., Olive, A. J., Chen, X., Steyn, A. J. C., & Sassetti, C. M. (2021). Host immunity increases Mycobacterium tuberculosis reliance on cytochrome bd oxidase. PLOS Pathogens, 17(7), e1008911. https://doi.org/10.1371/journal.ppat.1008911
Cele, S., Gazy, I., Jackson, L., Hwa, S.-H., Tegally, H., Lustig, G., Giandhari, J., Pillay, S., Wilkinson, E., Naidoo, Y., Karim, F., Ganga, Y., Khan, K., Balazs, A. B., Gosnell, B. I., Hanekom, W., Moosa, M.-Y. S., Lessells, R. J., de Oliveira, T., & Sigal, A. (2021). Escape of SARS-CoV-2 501Y.V2 variants from neutralization by convalescent plasma. MedRxiv, 2021.01.26.21250224. https://doi.org/10.1101/2021.01.26.21250224
Cele, S., Jackson, L., Khoury, D. S., Khan, K., Moyo-Gwete, T., Tegally, H., San, J. E., Cromer, D., Scheepers, C., Amoako, D. G., Karim, F., Bernstein, M., Lustig, G., Archary, D., Smith, M., Ganga, Y., Jule, Z., Reedoy, K., Hwa, S.-H., Giandhari, J., Blackburn … Sigal, A. (2021). Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization. Nature. https://doi.org/10.1038/s41586-021-04387-1
Chappell, E., Thorne, C., Collins, I. J., Baisley, K., Yapa, H. M., Gareta, D., Bärnighausen, T., Herbst, K., & Judd, A. (2021). It ain’t what you do, it’s the way that you do it: The pitfalls of using routine data to measure early infant HIV diagnosis in HIV-exposed infants. PLOS ONE, 16(9), e0257496. https://doi.org/10.1371/journal.pone.0257496
Chen, S., Prettner, K., Kuhn, M., Geldsetzer, P., Wang, C., Bärnighausen, T., & Bloom, D. E. (2021). Climate and the spread of COVID-19. Scientific reports11(1), 9042. https://doi.org/10.1038/s41598-021-87692-z
Chetty-Makkan, C. M., deSanto, D., Lessells, R., Charalambous, S., Velen, K., Makgopa, S., Gumede, D., Fielding, K., & Grant, A. D. (2021). Exploring the promise and reality of ward-based primary healthcare outreach teams conducting TB household contact tracing in three districts of South Africa. PLOS ONE, 16(8), e0256033. https://doi.org/10.1371/journal.pone.0256033
Chetty-Makkan, C. M., deSanto, D., Lessells, R., Charalambous, S., Velen, K., Makgopa, S., Gumede, D., Fielding, K., & Grant, A. D. (2021). Exploring the promise and reality of ward-based primary healthcare outreach teams conducting TB household contact tracing in three districts of South Africa. PLOS ONE, 16(8), e0256033. https://doi.org/10.1371/journal.pone.0256033
Chetty-Makkan, C. M., Hoffmann, C. J., Charalambous, S., Botha, C., Ntshuntshe, S., Nkosi, N., & Kim, H.-Y. (2021). Youth Preferences for HIV Testing in South Africa: Findings from the Youth Action for Health (YA4H) Study Using a Discrete Choice Experiment. AIDS and Behavior, 25(1), 182–190. https://doi.org/10.1007/s10461-020-02960-9
Chimbindi, N., Birdthistle, I., Floyd, S., Harling, G., Mthiyane, N., Zuma, T., Hargreaves, J. R., Seeley, J., & Shahmanesh, M. (2020). Directed and target focused multi‐sectoral adolescent HIV prevention: Insights from implementation of the ‘DREAMS Partnership’ in rural South Africa. Journal of the International AIDS Society, 23(S5). https://doi.org/10.1002/jia2.25575
Chimbindi, N., Mthiyane, N., Zuma, T., Baisley, K., Pillay, D., McGrath, N., Harling, G., Sherr, L., Birdthistle, I., Floyd, S., Dreyer, J., Nakasone, S., Seeley, J., & Shahmanesh, M. (2021). Antiretroviral therapy based HIV prevention targeting young women who sell sex: A mixed method approach to understand the implementation of PrEP in a rural area of KwaZulu-Natal, South Africa. AIDS Care, 1–9. https://doi.org/10.1080/09540121.2021.1902933
Chinta, K. C., Pacl, H. T., Agarwal, A., & Steyn, A. J. C. (2021). Heme Oxygenase-1 as a Pharmacological Target for Host-Directed Therapy to Limit Tuberculosis Associated Immunopathology. Antioxidants, 10(2), 177. https://doi.org/10.3390/antiox10020177
Clark, J. J., Sharma, P., Bentley, E. G., Harding, A. C., Kipar, A., Neary, M., Box, H., Hughes, G. L., Patterson, E. I., Sharp, J., de Oliveira, T., Sigal, A., Hiscox, J. A., James, W. S., Carroll, M. W., Owen, A., & Stewart, J. P. (2021). Naturally-acquired immunity in Syrian Golden Hamsters provides protection from re-exposure to emerging heterosubtypic SARS-CoV-2 variants B.1.1.7 and B.1.351 [Preprint]. Microbiology. https://doi.org/10.1101/2021.03.10.434447
Collier, D. A., De Marco, A., Ferreira, I. A. T. M., Meng, B., Datir, R., Walls, A. C., Kemp S, S. A., Bassi, J., Pinto, D., Fregni, C. S., Bianchi, S., Tortorici, M. A., Bowen, J., Culap, K., Jaconi, S., Cameroni, E., Snell, G., Pizzuto, M. S., Pellanda, A. F., … Gupta, R. K. (2021). SARS-CoV-2 B.1.1.7 sensitivity to mRNA vaccine-elicited, convalescent and monoclonal antibodies. MedRxiv, 2021.01.19.21249840. https://doi.org/10.1101/2021.01.19.21249840
Collinson, M. A., Mudzana, T., Mutevedzi, T., Kahn, K., Maimela, E., Gómez-Olivé, F. X., Mngomezulu, T., Gareta, D., Kabudula, C. W., Nemuramba, R., Tlouyamma, J., Tollman, S., & Herbst, K. (2021). Cohort Profile: South African Population Research Infrastructure Network (SAPRIN). International Journal of Epidemiology, dyab261. https://doi.org/10.1093/ije/dyab261
Correa-Agudelo, E., Kim, H.-Y., Musuka, G. N., Mukandavire, Z., Akullian, A., & Cuadros, D. F. (2021). Associated health and social determinants of mobile populations across HIV epidemic gradients in Southern Africa. Journal of Migration and Health, 3, 100038. https://doi.org/10.1016/j.jmh.2021.100038
Correa-Agudelo, E., Kim, H.-Y., Musuka, G. N., Mukandavire, Z., Akullian, A., & Cuadros, D. F. (2021). Associated health and social determinants of mobile populations across HIV epidemic gradients in Southern Africa. Journal of Migration and Health, 3, 100038. https://doi.org/10.1016/j.jmh.2021.100038
Correa-Agudelo, E., Kim, H.-Y., Musuka, G. N., Mukandavire, Z., Miller, F. D., Tanser, F., & Cuadros, D. F. (2021). The epidemiological landscape of anemia in women of reproductive age in sub-Saharan Africa. Scientific Reports,11(1),11955. https://doi.org/10.1038/s41598-021-91198-z
Cumming, B. M., Baig, Z., Addicott, K. W., Chen, D., & Steyn, A. J. C. (2021). Host bioenergetic parameters reveal cytotoxicity of anti-tuberculosis drugs undetected using conventional viability assays. Antimicrobial Agents and Chemotherapy. https://doi.org/10.1128/AAC.00932-21
Cumming, B. M., Baig, Z., Addicott, K. W., Chen, D., & Steyn, A. J. C. (2021). Host bioenergetic parameters reveal cytotoxicity of anti-tuberculosis drugs undetected using conventional viability assays. Antimicrobial Agents and Chemotherapy. https://doi.org/10.1128/AAC.00932-21
Deckert, A., Anders, S., de Allegri, M., Nguyen, H. T., Souares, A., McMahon, S., Boerner, K., Meurer, M., Herbst, K., Sand, M., Koeppel, L., Siems, T., Brugnara, L., Brenner, S., Burk, R., Lou, D., Kirrmaier, D., Duan, Y., Ovchinnikova, S., … Denkinger, C. (2021). Effectiveness and cost-effectiveness of four different strategies for SARS-CoV-2 surveillance in the general population (CoV-Surv Study): A structured summary of a study protocol for a cluster-randomised, two-factorial controlled trial. Trials, 22(1), 39. https://doi.org/10.1186/s13063-020-04982-z
Deeks, Steven G., et al. “Research Priorities for an HIV Cure: International AIDS Society Global Scientific Strategy 2021.” Nature Medicine, vol. 27, no. 12, Dec. 2021, pp. 2085–98. DOI.org (Crossref), https://doi.org/10.1038/s41591-021-01590-5.
Deol, A.K., Scarponi, D., Beckwith, P., Yates, T.A., Karat, A.S., Yan, A.W.C., Baisley, K.S., Grant, A.D., White, R.G., McCreesh, N. (2021). Estimating ventilation rates in rooms with varying occupancy levels: Relevance for reducing transmission risk of airborne pathogens. PLoS ONE, 16, e0253096. https://doi.org/10.1371/journal.pone.0253096
Doyle, A. M., Dziva Chikwari, C., Majozi, N., Simwinga, M., Mayingire, G. R., Simbeye, K., Dringus, S., & Bernays, S. (2021). Engagement with young people as partners in health research: Four case studies from Sub‐Saharan Africa. Tropical Medicine & International Health, tmi.13702. https://doi.org/10.1111/tmi.13702
Elkington, P., Polak, M. E., Reichmann, M. T., & Leslie, A. (2021). Understanding the tuberculosis granuloma: The matrix revolutions. Trends in Molecular Medicine, S1471491421003142. https://doi.org/10.1016/j.molmed.2021.11.004
Fardoos, R., Asowata, O.E., Herbert, N., Nyquist, S.K., Zungu, Y., Singh, A., Ngoepe, A., Mbano, I.M., Mthabela, N., Ramjit, D., Karim, F., Kuhn, W., Madela, F.G., Manzini, V.T., Anderson, F., Berger, B., Pers, T.H., Shalek, A.K., Leslie, A., Kløverpris, H., (2021). HIV infection drives interferon signalling within intestinal SARS-CoV-2 target cells. JCI Insight. https://doi.org/10.1172/jci.insight.148920
Farinre, O., Gounder, K., Reddy, T., Tongo, M., Hare, J., Chaplin, B., Gilmour, J., Kanki, P., Mann, J. K., & Ndung’u, T. (2021). Subtype-specific differences in Gag-protease replication capacity of HIV-1 isolates from East and West Africa. Retrovirology, 18(1), 11. https://doi.org/10.1186/s12977-021-00554-4
Faulkner, N., Ng, K. W., Wu, M., Harvey, R., Margaritis, M., Paraskevopoulou, S., Houlihan, C. F., Hussain, S., Greco, M., Bolland, W., Warchal, S., Heaney, J., Rickman, H., Spyer, M. J., Frampton, D., Byott, M., de Oliveira, T., Sigal, A., Kjaer, S., … Kassiotis, G. (2021). Reduced antibody cross-reactivity following infection with B.1.1.7 than with parental SARS-CoV-2 strains [Preprint]. Immunology. https://doi.org/10.1101/2021.03.01.433314
Fehr, J., Konigorski, S., Olivier, S., Gunda, R., Surujdeen, A., Gareta, D., Smit, T., Baisley, K., Moodley, S., Moosa, Y., Hanekom, W., Koole, O., Ndung’u, T., Pillay, D., Grant, A.D., Siedner, M.J., Lippert, C., Wong, E.B., the Vukuzazi Team, (2021). Computer-aided interpretation of chest radiography reveals the spectrum of tuberculosis in rural South Africa. npj Digit. Med. 4, 106. https://doi.org/10.1038/s41746-021-00471-y
Ferreira, I., Kemp, S., Datir, R., Saito, A., Meng, B., Rakshit, P., Takaori-Kondo, A., Kosugi, Y., Uriu, K., Kimura, I., Shirakawa, K., Abdullahi, A., Agarwal, A., Ozono, S., Tokunaga, K.,Sato, K., Gupta, R.K., (2021). SARS-CoV-2 B.1.617 mutations L452 and E484Q are not synergistic for antibody evasion. The Journal of Infectious Diseases, jiab368. https://doi.org/10.1093/infdis/jiab368
Garcia-Beltran, W. F., Lam, E. C., Denis, K. S., Nitido, A. D., Garcia, Z. H., Hauser, B. M., Feldman, J., Pavlovic, M. N., Gregory, D. J., Poznansky, M. C., Sigal, A., Schmidt, A. G., Iafrate, A. J., Naranbhai, V., & Balazs, A. B. (2021). Circulating SARS-CoV-2 variants escape neutralization by vaccine-induced humoral immunity. MedRxiv, 2021.02.14.21251704. https://doi.org/10.1101/2021.02.14.21251704
Garcia-Beltran, W. F., Lam, E. C., St. Denis, K., Nitido, A. D., Garcia, Z. H., Hauser, B. M., Feldman, J., Pavlovic, M. N., Gregory, D. J., Poznansky, M. C., Sigal, A., Schmidt, A. G., Iafrate, A. J., Naranbhai, V., & Balazs, A. B. (2021). Multiple SARS-CoV-2 variants escape neutralization by vaccine-induced humoral immunity. Cell, S0092867421002981. https://doi.org/10.1016/j.cell.2021.03.013
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Rodel, H. E., Ferreira, I. A. T. M., Ziegler, C. G. K., Ganga, Y., Bernstein, M., Hwa, S.-H., Nargan, K., Lustig, G., Kaplan, G., Noursadeghi, M., Shalek, A. K., Steyn, A. J. C., & Sigal, A. (2021). Aggregated Mycobacterium tuberculosis Enhances the Inflammatory Response. Frontiers in Microbiology, 12, 757134. https://doi.org/10.3389/fmicb.2021.757134
Sanders, E. J., Agutu, C., Elst, E., Hassan, A., Gichuru, E., Mugo, P., Farquhar, C., Babigumira, J. B., Goodreau, S. M., Hamilton, D. T., Ndung’u, T., Sirengo, M., Chege, W., & Graham, S. M. (2021). Effect of an opt‐out point‐of‐care HIV‐1 nucleic acid testing intervention to detect acute and prevalent HIV infection in symptomatic adult outpatients and reduce HIV transmission in Kenya: A randomized controlled trial. HIV Medicine, hiv.13157. https://doi.org/10.1111/hiv.13157
Shahmanesh, M., Mthiyane, T. N., Herbst, C., Neuman, M., Adeagbo, O., Mee, P., Chimbindi, N., Smit, T., Okesola, N., Harling, G., McGrath, N., Sherr, L., Seeley, J., Subedar, H., Johnson, C., Hatzold, K., Terris-Prestholt, F., Cowan, F. M., & Corbett, E. L. (2021). Effect of peer-distributed HIV self-test kits on demand for biomedical HIV prevention in rural KwaZulu-Natal, South Africa: a three-armed cluster-randomised trial comparing social networks versus direct delivery. BMJ Global Health, 6(Suppl 4), e004574. https://doi.org/10.1136/bmjgh-2020-004574
Shahmanesh, M., Okesola, N., Chimbindi, N., Zuma, T., Mdluli, S., Mthiyane, N., Adeagbo, O., Dreyer, J., Herbst, C., McGrath, N., Harling, G., Sherr, L., Seeley, J., (2021). Thetha Nami: participatory development of a peer-navigator intervention to deliver biosocial HIV prevention for adolescents and youth in rural South Africa. BMC Public Health, 21, 1393. https://doi.org/10.1186/s12889-021-11399-z
Siedner, M. J. (2021). Ivermectin for the treatment of COVID-19 disease: Too good to pass up or too good to be true? Open Forum Infectious Diseases, ofab318. https://doi.org/10.1093/ofid/ofab318
Singer, S. N., Ndumnego, O. C., Kim, R. S., Ndung’u, T., Anastos, K., French, A., Churchyard, G., Paramithiothis, E., Kasprowicz, V. O., & Achkar, J. M. (2022). Plasma host protein biomarkers correlating with increasing Mycobacterium tuberculosis infection activity prior to tuberculosis diagnosis in people living with HIV. EBioMedicine, 75, 103787. https://doi.org/10.1016/j.ebiom.2021.103787
Singh, R., Ramsuran, V., Naranbhai, V., Yende-Zuma, N., Garrett, N., Mlisana, K., Dong, K.L., Walker, B.D., Abdool Karim, S.S., Carrington, M., Ndung’u, T. (2021). Epigenetic Regulation of BST-2 Expression Levels and the Effect on HIV-1 Pathogenesis. Front. Immunol., 12, 669241. https://doi.org/10.3389/fimmu.2021.669241
Sithole, N., Gunda, R., Koole, O., Krows, M., Schaafsma, T., Moshabela, M., Siedner, M. J., Celum, C., & Barnabas, R. V. (2021). Undisclosed Antiretroviral Therapy Use at Primary Health Care Clinics in Rural KwaZulu Natal South Africa: A DO-ART Trial Sub-study. AIDS and Behavior, 25(11), 3695–3703. https://doi.org/10.1007/s10461-021-03319-4
Sithole, N., Gunda, R., Koole, O., Krows, M., Schaafsma, T., Moshabela, M., Siedner, M.J., Celum, C., Barnabas, R.V. (2021). Undisclosed Antiretroviral Therapy Use at Primary Health Care Clinics in Rural KwaZulu Natal South Africa: A DO-ART Trial Sub-study. AIDS Behav., https://doi.org/10.1007/s10461-021-03319-4
Sithole, N., Shahmanesh, M., Koole, O., Krows, M., Schaafsma, T., Siedner, M. J., Celum, C., Barnabas, R. V., & Shapiro, A. E. (2021). Implementation of HIV Self-Testing to Reach Men in Rural uMkhanyakude, KwaZulu-Natal, South Africa. A DO-ART Trial Sub Study. Frontiers in Public Health, 9, 652887. https://doi.org/10.3389/fpubh.2021.652887
Sithole, N., Shahmanesh, M., Koole, O., Krows, M., Schaafsma, T., Siedner, M. J., Celum, C., Barnabas, R. V., & Shapiro, A. E. (2021). Implementation of HIV Self-Testing to Reach Men in Rural uMkhanyakude, KwaZulu-Natal, South Africa. A DO-ART Trial Sub Study. Frontiers in Public Health, 9, 652887. https://doi.org/10.3389/fpubh.2021.652887
Skelly, D. T., Harding, A. C., Gilbert-Jaramillo, J., Knight, M. L., Longet, S., Brown, A., Adele, S., Adland, E., Brown, H., Medawar Laboratory Team, Chinnakannan, S., Donnison, T., Ali, M., Rongkard, P., Pace, M., Zacharopoulou, P., Robinson, N., Csala, A., De Lara, C., … James, W. S. (2021). Two doses of SARS-CoV-2 vaccination induce robust immune responses to emerging SARS-CoV-2 variants of concern. Nature Communications, 12(1), 5061. https://doi.org/10.1038/s41467-021-25167-5
Skelly, D. T., Harding, A. C., Gilbert-Jaramillo, J., Knight, M. L., Longet, S., Brown, A., Adele, S., Adland, E., Brown, H., Medawar Laboratory Team, Chinnakannan, S., Donnison, T., Ali, M., Rongkard, P., Pace, M., Zacharopoulou, P., Robinson, N., Csala, A., De Lara, C., … James, W. S. (2021). Two doses of SARS-CoV-2 vaccination induce robust immune responses to emerging SARS-CoV-2 variants of concern. Nature Communications, 12(1), 5061. https://doi.org/10.1038/s41467-021-25167-5
Snyman, J., Hwa, S.-H., Krause, R., Muema, D., Reddy, T., Ganga, Y., Karim, F., Leslie, A., Sigal, A., Ndung’u, T., & the COMMIT-KZN Team. (2021). Similar antibody responses against SARS-CoV-2 in HIV uninfected and infected individuals on antiretroviral therapy during the first South African infection wave. Clinical Infectious Diseases, ciab758. https://doi.org/10.1093/cid/ciab758
Snyman, J., Sanders, E. J., & Ndung’u, T. (2021). COVID-19 in Africa: Preexisting immunity and HIV. AIDS, 35(14), 2391–2393. https://doi.org/10.1097/QAD.0000000000003079  
Tanser, F. C., Kim, H., Mathenjwa, T., Shahmanesh, M., Seeley, J., Matthews, P., Wyke, S., McGrath, N., Adeagbo, O., Sartorius, B., Yapa, H. M., Zuma, T., Zeitlin, A., Blandford, A., Dobra, A., & Bärnighausen, T. (2021). Home‐Based Intervention to Test and Start (HITS): A community‐randomized controlled trial to increase HIV testing uptake among men in rural South Africa. Journal of the International AIDS Society, 24(2). https://doi.org/10.1002/jia2.25665
Tegally, H., Wilkinson, E., Giovanetti, M., Iranzadeh, A., Fonseca, V., Giandhari, J., Doolabh, D., Pillay, S., San, E. J., Msomi, N., Mlisana, K., von Gottberg, A., Walaza, S., Allam, M., Ismail, A., Mohale, T., Glass, A. J., Engelbrecht, S., Van Zyl, G., l, Preiser, W., Petruccione, F., Sigal, A., Hardie, D., Marais, G., Hsiao, M., Korsman, S., Davies, M., Tyers, L., Mudau, I., York, D., Maslo, C., Goedhals, D., Abrahams, S., Laguda-Akingba, O.,  Alisoltani-Dehkordi, A., Godzik, A., Wibmer, C.K., Sewell, B.T., Lourenço, J., Alcantara, L.C.Jr., Pond, S.L.K., Weaver, S., Martin, D., Lessells, R.J., Bhiman, J.N., Williamson, C.,  … de Oliveira, T. (2021). Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein. Nature. https://doi.org/10.1038/s41586-021-03402-9
Tegally, H., Wilkinson, E., Lessells, R. J., Giandhari, J., Pillay, S., Msomi, N., Mlisana, K., Bhiman, J. N., von Gottberg, A., Walaza, S., Fonseca, V., Allam, M., Ismail, A., Glass, A. J., Engelbrecht, S., Van Zyl, G., Preiser, W., Williamson, C., Petruccione, F., … de Oliveira, T. (2021). Sixteen novel lineages of SARS-CoV-2 in South Africa. Nature Medicine. https://doi.org/10.1038/s41591-021-01255-3
The CITIID-NIHR BioResource COVID-19 Collaboration, The COVID-19 Genomics UK (COG-UK) consortium, Collier, D. A., De Marco, A., Ferreira, I. A. T. M., Meng, B., Datir, R., Walls, A. C., Kemp S, S. A., Bassi, J., Pinto, D., Fregni, C. S., Bianchi, S., Tortorici, M. A., Bowen, J., Culap, K., Jaconi, S., Cameroni, E., Snell, G., … Gupta, R. K. (2021). Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies. Nature. https://doi.org/10.1038/s41586-021-03412-7
The CITIID-NIHR BioResource COVID-19 Collaboration, The COVID-19 Genomics UK (COG-UK) Consortium, Kemp, S. A., Collier, D. A., Datir, R. P., Ferreira, I. A. T. M., Gayed, S., Jahun, A., Hosmillo, M., Rees-Spear, C., Mlcochova, P., Lumb, I. U., Roberts, D. J., Chandra, A., Temperton, N., Sharrocks, K., Blane, E., Modis, Y., Leigh, K., … Gupta, R. K. (2021). SARS-CoV-2 evolution during treatment of chronic infection. Nature. https://doi.org/10.1038/s41586-021-03291-y
The NHLBI LungMap Consortium, The Human Cell Atlas Lung Biological Network, Muus, C., Luecken, M. D., Eraslan, G., Sikkema, L., Waghray, A., Heimberg, G., Kobayashi, Y., Vaishnav, E. D., Subramanian, A., Smillie, C., Jagadeesh, K. A., Duong, E. T., Fiskin, E., Triglia, E. T., Ansari, M., Cai, P., Lin, B., … Ziegler, C. G. K. (2021). Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics. Nature Medicine, 27(3), 546–559. https://doi.org/10.1038/s41591-020-01227-z
Tomita, A., Leyna, G. H., Kim, H.-Y., Moodley, Y., Mpolya, E., Mogeni, P., Cuadros, D. F., Dzomba, A., Vandormael, A., Bärnighausen, T., & Tanser, F. (2021). Patterns of multimorbidity and their association with hospitalisation: A population-based study of older adults in urban Tanzania. Age and Ageing, afab046. https://doi.org/10.1093/ageing/afab046
Tsai, A. C., Harling, G., Reynolds, Z., Gilbert, R. F., & Siedner, M. J. (2021). Coronavirus Disease 2019 (COVID-19) Transmission in the United States Before Versus After Relaxation of Statewide Social Distancing Measures. Clinical Infectious Diseases, 73(Supplement_2), S120–S126. https://doi.org/10.1093/cid/ciaa1502
Tsai, A. C., Harling, G., Reynolds, Z., Gilbert, R. F., & Siedner, M. J. (2021). Coronavirus Disease 2019 (COVID-19) Transmission in the United States Before Versus After Relaxation of Statewide Social Distancing Measures. Clinical Infectious Diseases, 73(Supplement_2), S120–S126. https://doi.org/10.1093/cid/ciaa1502
Turbé, V., Herbst, C., Mngomezulu, T., Meshkinfamfard, S., Dlamini, N., Mhlongo, T., Smit, T., Cherepanova, V., Shimada, K., Budd, J., Arsenov, N., Gray, S., Pillay, D., Herbst, K., Shahmanesh, M., & McKendry, R. A. (2021). Deep learning of HIV field-based rapid tests. Nature Medicine, 10.1038/s41591-021-01384-9. Advance online publication. https://doi.org/10.1038/s41591-021-01384-9
Turkova A, White E, Mujuru HA, Kekitiinwa AR, Kityo CM, Violari A, Lugemwa A, Cressey TR, Musoke P, Variava E, Cotton MF, Archary M, Puthanakit T, Behuhuma O, Kobbe R, Welch SB, Bwakura-Dangarembizi M, Amuge P, Kaudha E, Barlow-Mosha L, Makumbi S, Ramsagar N, Ngampiyaskul C, Musoro G, Atwine L, Liberty A, Musiime V, Bbuye D, Ahimbisibwe GM, Chalermpantmetagul S, Ali S, Sarfati T, Wynne B, Shakeshaft C, Colbers A, Klein N, Bernays S, Saïdi Y, Coelho A, Grossele T, Compagnucci A, Giaquinto C, Rojo P, Ford D, Gibb DM; ODYSSEY Trial Team. (2021). Dolutegravir as First- or Second-Line Treatment for HIV-1 Infection in Children. New England Journal of Medicine, 385(27), 2531–2543. https://doi.org/10.1056/NEJMoa2108793
van Empel, E., de Vlieg, R. A., Montana, L., Gómez-Olivé, F. X., Kahn, K., Tollman, S., Berkman, L., Bärnighausen, T. W., & Manne-Goehler, J. (2021). Older Adults Vastly Overestimate Both HIV Acquisition Risk and HIV Prevalence in Rural South Africa. Archives of Sexual Behaviorhttps://doi.org/10.1007/s10508-021-01982-1
Wenlock, R. D., Brown, C. S., Iwuji, C., & Vera, J. H. (2021). Can I go back to work? A case of persistent SARS-CoV-2 with advanced untreated HIV infection. International Journal of STD & AIDS, 095646242110516. https://doi.org/10.1177/09564624211051631
Williams, Shannon M., Jenny Renju, Mosa Moshabela, and Alison Wringe. 2021. “Understanding the Influence of Health Systems on Women’s Experiences of Option B+: A Meta-Ethnography of Qualitative Research from Sub-Saharan Africa.” Global Public Health 16(2):167–85. doi: 10.1080/17441692.2020.1851385
Wong, E. B., Olivier, S., Gunda, R., Koole, O., Surujdeen, A., Gareta, D., Munatsi, D., Modise, T. H., Dreyer, J., Nxumalo, S., Smit, T. K., Ording-Jespersen, G., Mpofana, I. B., Khan, K., Sikhosana, Z., Moodley, S., Shen, Y. J., Khoza, T., Mhlongo, N., Bucibo, S., Nyamande K, Baisley K. J, Cuadros D, Tanser F, Grant A. D, Herbst K, Seeley J, Hanekom W.A, Ndung'u T, Siedner M. J, Pillay D; Vukuzazi Team. (2021). Convergence of infectious and non-communicable disease epidemics in rural South Africa: a cross-sectional, population-based multimorbidity study. The Lancet Global health, 9(7), e967–e976. https://doi.org/10.1016/S2214-109X(21)00176-5
Yapa, H. M., Kim, H.-Y., Petoumenos, K., Post, F. A., Jiamsakul, A., De Neve, J.-W., Tanser, F., Iwuji, C., Baisley, K., Shahmanesh, M., Pillay, D., Siedner, M. J., Bärnighausen, T., & Bor, J. (2021). CD4+ T-cell count at antiretroviral therapy initiation in the “treat all” era in rural South Africa: An interrupted time series analysis. Clinical Infectious Diseases, ciab650. https://doi.org/10.1093/cid/ciab650
Yapa, H. M., Kim, H.-Y., Petoumenos, K., Post, F. A., Jiamsakul, A., De Neve, J.-W., Tanser, F., Iwuji, C., Baisley, K., Shahmanesh, M., Pillay, D., Siedner, M. J., Bärnighausen, T., & Bor, J. (2021). CD4+ T-cell count at antiretroviral therapy initiation in the “treat all” era in rural South Africa: An interrupted time series analysis. Clinical Infectious Diseases, ciab650. https://doi.org/10.1093/cid/ciab650
Zuma, T., King, R., Ngwenya, N., Kasujja, F. X., Chimbindi, N., Kawuma, R., Shahmanesh, M., Bernays, S., & Seeley, J. (2021). Lives Interrupted: Navigating Hardship During COVID-19 Provides Lessons in Solidarity and Visibility for Mobile Young People in South Africa and Uganda. Progress in Development Studies, 21(4), 419–434. https://doi.org/10.1177/1464993421998209
2020 Publications
Adeagbo, O., Kim, H.-Y., Tanser, F., Xulu, S., Dlamini, N., Gumede, V., Mathenjwa, T., Bärnighausen, T., McGrath, N., Blandford, A., Seeley, J., & Shahmanesh, M. (2020). Acceptability of a tablet-based application to support early HIV testing among men in rural KwaZulu-Natal, South Africa: A mixed method study. AIDS Care, 1–8. https://doi.org/10.1080/09540121.2020.1742867
Adland, E., Millar, J., Bengu, N., Muenchhoff, M., Fillis, R., Sprenger, K., Ntlantsana, V., Roider, J., Vieira, V., Govender, K., Adamson, J., Nxele, N., Ochsenbauer, C., Kappes, J., Mori, L., van Lobenstein, J., Graza, Y., Chinniah, K., Kapongo, C., … Goulder, P. (2020). Sex-specific innate immune selection of HIV-1 in utero is associated with increased female susceptibility to infection. Nature Communications, 11(1), 1767. https://doi.org/10.1038/s41467-020-15632-y
Asiimwe, S. B., Montana, L., Kahn, K., Tollman, S. M., Kabudula, C. W., Gómez-Olivé, X. F., Berkman, L. F., Glymour, M. M., & Bärnighausen, T. (2020). HIV Status and Antiretroviral Therapy as Predictors of Disability among Older South Africans: Overall Association and Moderation by Body Mass Index. Journal of Aging and Health, 089826432092532. https://doi.org/10.1177/0898264320925323
Auld, A.F., Fielding, K., Agizew, T., Maida, A., Mathoma, A., Boyd, R., Date, A., Pals, S.L., Bicego, G., Liu, Y., Shiraishi, R.W., Ehrenkranz, P., Serumola, C., Mathebula, U., Alexander, H., Charalambous, S., Emerson, C., Rankgoane-Pono, G., Pono, P., Finlay, A., Shepherd, J.C., Holmes, C., Ellerbrock, T.V., Grant, A.D., 2020. Risk scores for predicting early antiretroviral therapy mortality in sub-Saharan Africa to inform who needs intensification of care: a derivation and external validation cohort study. BMC Med 18, 311. https://doi.org/10.1186/s12916-020-01775-8  
Baggett, Travis P., Justine A. Scott, Mylinh H. Le, Fatma M. Shebl, Christopher Panella, Elena Losina, Clare Flanagan, Jessie M. Gaeta, Anne Neilan, Emily P. Hyle, Amir Mohareb, Krishna P. Reddy, Mark J. Siedner, Guy Harling, Milton C. Weinstein, Andrea Ciaranello, Pooyan Kazemian, and Kenneth A. Freedberg. 2020. “Clinical Outcomes, Costs, and Cost-Effectiveness of Strategies for Adults Experiencing Sheltered Homelessness During the COVID-19 Pandemic.” JAMA Network Open 3(12):e2028195. doi: 10.1001/jamanetworkopen.2020.28195.
Barnabas, R. V., Szpiro, A. A., van Rooyen, H., Asiimwe, S., Pillay, D., Ware, N. C., Schaafsma, T. T., Krows, M. L., van Heerden, A., Joseph, P., Shahmanesh, M., Wyatt, M. A., Sausi, K., Turyamureeba, B., Sithole, N., Morrison, S., Shapiro, A. E., Roberts, D. A., Thomas, K. K., … Celum, C. (2020). Community-based antiretroviral therapy versus standard clinic-based services for HIV in South Africa and Uganda (DO ART): A randomised trial. The Lancet Global Health8(10), e1305–e1315. https://doi.org/10.1016/S2214-109X(20)30313-2
Barteit, S., Guzek, D., Jahn, A., Bärnighausen, T., Jorge, M. M., & Neuhann, F. (2020). Evaluation of e-learning for medical education in low- and middle-income countries: A systematic review. Computers & Education, 103726. https://doi.org/10.1016/j.compedu.2019.103726
Bbosa, N., Ssemwanga, D., Ssekagiri, A., Xi, X., Mayanja, Y., Bahemuka, U., Seeley, J., Pillay, D., Abeler-Dörner, L., Golubchik, T., Fraser, C., Kaleebu, P., & Ratmann, O. (2020). Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda. Viruses, 12(3), 331. https://doi.org/10.3390/v12030331
Bekker, L.-G., Tatoud, R., Dabis, F., Feinberg, M., Kaleebu, P., Marovich, M., Ndung’u, T., Russell, N., Johnson, J., Luba, M., Fauci, A. S., Morris, L., Pantaleo, G., Buchbinder, S., Gray, G., Vekemans, J., Kim, J. H., Levy, Y., Corey, L., … Johnston, M. I. (2020). The complex challenges of HIV vaccine development require renewed and expanded global commitment. The Lancet, 395(10221), 384–388. https://doi.org/10.1016/S0140-6736(19)32682-0
Bernays, S., Lanyon, C., Dlamini, V., Ngwenya, N., & Seeley, J. (2020). Being young and on the move in South Africa: How ‘waithood’ exacerbates HIV risks and disrupts the success of current HIV prevention interventions. Vulnerable Children and Youth Studies, 1–11. https://doi.org/10.1080/17450128.2020.1739359 
Calvert, C., Marston, M., Slaymaker, E., Crampin, A. C., Price, A. J., Klein, N., Herbst, K., Michael, D., Urassa, M., Clark, S. J., Ronsmans, C., & Reniers, G. (2020). Direct maternal deaths attributable to HIV in the era of ART: Evidence from three population-based HIV cohorts with verbal autopsy. AIDS, Publish Ahead of Print. https://doi.org/10.1097/QAD.0000000000002552
Chimbindi, N., Birdthistle, I., Floyd, S., Harling, G., Mthiyane, N., Zuma, T., Hargreaves, J. R., Seeley, J., & Shahmanesh, M. (2020). Directed and target focused multi‐sectoral adolescent HIV prevention: Insights from implementation of the ‘DREAMS Partnership’ in rural South Africa. Journal of the International AIDS Society23(S5). https://doi.org/10.1002/jia2.25575
Chimukuche, R. S., Wringe, A., Songo, J., Hassan, F., Luwanda, L., Kalua, T., Moshabela, M., Renju, J., & Seeley, J. (2020). Investigating the implementation of differentiated HIV services and implications for pregnant and postpartum women: A mixed methods multi-country study. Global Public Health, 1–14. https://doi.org/10.1080/17441692.2020.1795221
Cohen, K. A., Stott, K. E., Munsamy, V., Manson, A. L., Earl, A. M., & Pym, A. S. (2020). Evidence for expanding the role of streptomycin in the management of drug-resistant M. tuberculosis. Antimicrobial Agents and Chemotherapy, AAC.00860-20, aac;AAC.00860-20v1. https://doi.org/10.1128/AAC.00860-20
Collier, D. A., Assennato, S. M., Warne, B., Sithole, N., Sharrocks, K., Ritchie, A., Ravji, P., Routledge, M., Sparkes, D., Skittrall, J., Smielewska, A., Ramsey, I., Goel, N., Curran, M., Enoch, D., Tassell, R., Lineham, M., Vaghela, D., Leong, C., … Gupta, R. K. (2020). Point of care nucleic acid testing for SARS-CoV-2 in hospitalised patients: A clinical validation trial and implementation study. Cell Reports Medicine, 100062. https://www.sciencedirect.com/science/article/pii/S2666379120300781 
Cork, M. A., Wilson, K. F., Perkins, S., Collison, M. L., Deshpande, A., Eaton, J. W., Earl, L., Haeuser, E., Justman, J. E., Kinyoki, D. K., Mayala, B. K., Mosser, J. F., Murray, C. J. L., Nkengasong, J. N., Piot, P., Sartorius, B., Schaeffer, L. E., Serfes, A. L., Sligar, A., … Dwyer-Lindgren, L. (2020). Mapping male circumcision for HIV prevention efforts in sub-Saharan Africa. BMC Medicine, 18(1), 189. https://doi.org/10.1186/s12916-020-01635-5
Cumming, B. M., Reddy, V. P., & Steyn, A. J. C. (2020). The Analysis of Mycobacterium tuberculosis-Induced Bioenergetic Changes in Infected Macrophages Using an Extracellular Flux Analyzer. In S. Mishra (Ed.), Immunometabolism (Vol. 2184, pp. 161–184). Springer US. https://doi.org/10.1007/978-1-0716-0802-9_12
Dambach, P., Mahenge, B., Mashasi, I., Muya, A., Barnhart, D. A., Bärnighausen, T. W., Spiegelman, D., & Harling, G. (2020). Socio-demographic characteristics and risk factors for HIV transmission in female bar workers in sub-Saharan Africa: A systematic literature review. BMC Public Health, 20(1), 697. https://doi.org/10.1186/s12889-020-08838-8
Dube, A., Renju, J., Wamoyi, J., Hassan, F., Seeley, J., Chimukuche, R. S., Songo, J., Kalua, T., Crampin, A., Moshabela, M., & Wringe, A. (2020). Consequences of male partner engagement policies on HIV care-seeking in three African countries: Findings from the SHAPE UTT study. Global Public Health, 1–11. https://doi.org/10.1080/17441692.2020.1805788
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Renju, J., Rice, B., Songo, J., Hassan, F., Chimukuche, R. S., McLean, E., Kalua, T., Kajoka, D., Geubbels, E., Moshabela, M., Seeley, J., & Wringe, A. (2020). Influence of evolving HIV treatment guidance on CD4 counts and viral load monitoring: A mixed-methods study in three African countries. Global Public Health, 1–17. https://doi.org/10.1080/17441692.2020.1805785
Rosenberg, M., Gómez‐Olivé, F. X., Wagner, R. G., Rohr, J., Payne, C. F., Berkman, L., Kahn, K., Tollman, S., Bärnighausen, T., & Kobayashi, L. C. (2020). The relationships between cognitive function, literacy and HIV status knowledge among older adults in rural South Africa. Journal of the International AIDS Society, 23(3). https://doi.org/10.1002/jia2.25457
Saini, V., Chinta, K. C., Reddy, V. P., Glasgow, J. N., Stein, A., Lamprecht, D. A., Rahman, Md. A., Mackenzie, J. S., Truebody, B. E., Adamson, J. H., Kunota, T. T. R., Bailey, S. M., Moellering, D. R., Lancaster, J. R., & Steyn, A. J. C. (2020). Hydrogen sulfide stimulates Mycobacterium tuberculosis respiration, growth and pathogenesis. Nature Communications, 11(1), 557. https://doi.org/10.1038/s41467-019-14132-y
Shapiro, A. E., Heerden, A., Krows, M., Sausi, K., Sithole, N., Schaafsma, T. T., Koole, O., Rooyen, H., Celum, C. L., & Barnabas, R. V. (2020). An implementation study of oral and blood‐based HIV self‐testing and linkage to care among men in rural and peri‐urban KwaZulu‐Natal, South Africa. Journal of the International AIDS Society, 23(S2). https://doi.org/10.1002/jia2.25514
Siedner, M. J., Baisley, K., Koole, O., Mpofana, I., Ording-Jespersen, G., Matthews, P., Herbst, K., Smit, T., & Pillay, D. (2020). Does antiretroviral therapy use affect the accuracy of HIV rapid diagnostic assays? Experience from a demographic health and surveillance site in rural South Africa. Diagnostic Microbiology and Infectious Disease, 115031. https://doi.org/10.1016/j.diagmicrobio.2020.115031
Siedner, M. J., Harling, G., Derache, A., Smit, T., Khoza, T., Gunda, R., Mngomezulu, T., Gareta, D., Majozi, N., Ehlers, E., Dreyer, J., Nxumalo, S., Dayi, N., Ording-Jesperson, G., Ngwenya, N., Wong, E., Iwuji, C., Shahmanesh, M., Seeley, J., … Herbst, K. (2020). Protocol: Leveraging a demographic and health surveillance system for Covid-19 Surveillance in rural KwaZulu-Natal. Wellcome Open Research, 5, 109. https://doi.org/10.12688/wellcomeopenres.15949.1
Siedner, M. J., Kraemer, J. D., Meyer, M. J., Harling, G., Mngomezulu, T., Gabela, P., Dlamini, S., Gareta, D., Majozi, N., Ngwenya, N., Reynolds, Z., Seeley, J., Wong, E., Iwuji, C., Shahmanesh, M., Hanekom, W., & Herbst, K. (2020). Access to primary healthcare during lockdown measures for COVID-19 in rural South Africa: A longitudinal cohort study [Preprint]. Health Systems and Quality Improvement. https://doi.org/10.1101/2020.05.15.20103226
Singh, A., Kazer, S. W., Roider, J., Krista, K. C., Millar, J., Asowata, O. E., Ngoepe, A., Ramsuran, D., Fardoos, R., Ardain, A., Muenchhoff, M., Kuhn, W., Karim, F., Ndung’u, T., Shalek, A. K., Goulder, P., Leslie, A., & Kløverpris, H. N. (2020). Innate Lymphoid Cell Activation and Sustained Depletion in Blood and Tissue of Children Infected with HIV from Birth Despite Antiretroviral Therapy. Cell Reports32(11), 108153. https://doi.org/10.1016/j.celrep.2020.108153
Suchard, M. S., Adu-Gyamfi, C. G., Cumming, B. M., & Savulescu, D. M. (2020). Evolutionary Views of Tuberculosis: Indoleamine 2,3-Dioxygenase Catalyzed Nicotinamide Synthesis Reflects Shifts in Macrophage Metabolism: Indoleamine 2,3-Dioxygenase Reflects Altered Macrophage Metabolism During Tuberculosis Pathogenesis. BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, 42(5), e1900220. https://doi.org/10.1002/bies.201900220
Sweeney, S., Vassall, A., Guinness, L., Siapka, M., Chimbindi, N., Mudzengi, D., & Gomez, G. B. (2020). Examining Approaches to Estimate the Prevalence of Catastrophic Costs Due to Tuberculosis from Small-Scale Studies in South Africa. PharmacoEconomics. https://doi.org/10.1007/s40273-020-00898-3
Tanser, F., Kim, H.-Y., Vandormael, A., Iwuji, C., & Bärnighausen, T. (2020). Opportunities and Challenges in HIV Treatment as Prevention Research: Results from the ANRS 12249 Cluster-Randomized Trial and Associated Population Cohort. Current HIV/AIDS Reports. https://doi.org/10.1007/s11904-020-00487-1
Tezera, L. B., Bielecka, M. K., Ogongo, P., Walker, N. F., Ellis, M., Garay-Baquero, D. J., Thomas, K., Reichmann, M. T., Johnston, D. A., Wilkinson, K. A., Ahmed, M., Jogai, S., Jayasinghe, S. N., Wilkinson, R. J., Mansour, S., Thomas, G. J., Ottensmeier, C. H., Leslie, A., & Elkington, P. T. (2020). Anti-PD-1 immunotherapy leads to tuberculosis reactivation via dysregulation of TNF-α. ELife, 9, e52668. https://doi.org/10.7554/eLife.52668
Tlali, M., Fielding, K. L., Karat, A. S., Hoffmann, C. J., Muravha, T., Grant, A. D., & Charalambous, S. (2020). Sensitivity of the lateral flow urine lipoarabinomannan assay in ambulant adults with advanced HIV disease: Data from the TB Fast Track study. Transactions of The Royal Society of Tropical Medicine and Hygiene, 114(8), 556–560. https://doi.org/10.1093/trstmh/traa018
Tomita, A., Cuadros, D. F., Mabhaudhi, T., Sartorius, B., Ncama, B. P., Dangour, A. D., Tanser, F., Modi, A. T., Slotow, R., & Burns, J. K. (2020). Spatial clustering of food insecurity and its association with depression: A geospatial analysis of nationally representative South African data, 2008–2015. Scientific Reports, 10(1), 13771. https://doi.org/10.1038/s41598-020-70647-1
Umviligihozo, G., Cobarrubias, K. D., Chandrarathna, S., Jin, S. W., Reddy, N., Byakwaga, H., Muzoora, C., Bwana, M. B., Lee, G. Q., Hunt, P. W., Martin, J. N., Brumme, C. J., Bangsberg, D. R., Karita, E., Allen, S., Hunter, E., Ndung’u, T., Brumme, Z. L., & Brockman, M. A. (2020). Differential Vpu-Mediated CD4 and Tetherin Downregulation Functions among Major HIV-1 Group M Subtypes. Journal of Virology, 94(14), e00293-20, /jvi/94/14/JVI.00293-20.atom. https://doi.org/10.1128/JVI.00293-20
Vandormael, A., Cuadros, D., Dobra, A., Bärnighausen, T., & Tanser, F. (2020). HIV incidence declines in a rural South African population: A G-imputation approach for inference. BMC Public Health, 20(1), 1205. https://doi.org/10.1186/s12889-020-09193-4
Vandormael, A., Cuadros, D., Kim, H.-Y., Bärnighausen, T., & Tanser, F. (2020). The state of the HIV epidemic in rural KwaZulu-Natal, South Africa: A novel application of disease metrics to assess trajectories and highlight areas for intervention. International Journal of Epidemiology, dyz269. https://doi.org/10.1093/ije/dyz269
Vandormael, Alain, Maya Adam, Merlin Greuel, and Till Bärnighausen. 2020. “An Entertainment-Education Approach to Prevent COVID-19 Spread: Study Protocol for a Multi-Site Randomized Controlled Trial.” Trials 21(1):1025. doi: 10.1186/s13063-020-04942-7.
Yapa, H. M., Drayne, R., Klein, N., De Neve, J.-W., Petoumenos, K., Jiamsakul, A., Herbst, C., Pillay, D., Post, F. A., & Bärnighausen, T. (2020). Infant feeding knowledge and practice vary by maternal HIV status: A nested cohort study in rural South Africa. International Breastfeeding Journal15(1), 77. https://doi.org/10.1186/s13006-020-00317-5
Zaniewski, E., Dao Ostinelli, C. H., Chammartin, F., Maxwell, N., Davies, M., Euvrard, J., Dijk, J., Bosomprah, S., Phiri, S., Tanser, F., Sipambo, N., Muhairwe, J., Fatti, G., Prozesky, H., Wood, R., Ford, N., Fox, M. P., & Egger, M. (2020). Trends in CD4 and viral load testing 2005 to 2018: Multi‐cohort study of people living with HIV in Southern Africa. Journal of the International AIDS Society, 23(7). https://doi.org/10.1002/jia2.25546 
Ziegler, C. G. K., Allon, S. J., Nyquist, S. K., Mbano, I. M., Miao, V. N., Tzouanas, C. N., Cao, Y., Yousif, A. S., Bals, J., Hauser, B. M., Feldman, J., Muus, C., Wadsworth, M. H., Kazer, S. W., Hughes, T. K., Doran, B., Gatter, G. J., Vukovic, M., Taliaferro, F., … Zhang, K. (2020). SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues. Cell, 181(5), 1016-1035.e19. https://doi.org/10.1016/j.cell.2020.04.035
2019 Publications
Abeler-Dörner, L., Grabowski, M. K., Rambaut, A., Pillay, D., & Fraser, C. (2019). PANGEA-HIV 2: Phylogenetics And Networks for Generalised Epidemics in Africa. Current Opinion in HIV and AIDS, 14(3), 173–180. https://doi.org/10.1097/COH.0000000000000542
Adam, M., McMahon, S. A., Prober, C., & Bärnighausen, T. (2019). Human-Centered Design of Video-Based Health Education: An Iterative, Collaborative, Community-Based Approach. Journal of Medical Internet Research, 21(1), e12128. https://doi.org/10.2196/12128
Adam, M., Tomlinson, M., Le Roux, I., LeFevre, A. E., McMahon, S. A., Johnston, J., … Bärnighausen, T. (2019). The Philani MOVIE study: a cluster-randomized controlled trial of a mobile video entertainment-education intervention to promote exclusive breastfeeding in South Africa. BMC Health Services Research, 19(1), 211. https://doi.org/10.1186/s12913-019-4000-x
Adeagbo, O. A., Mthiyane, N., Herbst, C., Mee, P., Neuman, M., Dreyer, J., Chimbindi, N., Smit, T., Okesola, N., Johnson, C., Hatzold, K., Seeley, J., Cowan, F., Corbett, L., & Shahmanesh, M. (2019). Cluster randomised controlled trial to determine the effect of peer delivery HIV self-testing to support linkage to HIV prevention among young women in rural KwaZulu-Natal, South Africa: A study protocol. BMJ Open, 9(12), e033435. https://doi.org/10.1136/bmjopen-2019-033435
Adeagbo, O., Herbst, C., Blandford, A., McKendry, R., Estcourt, C., Seeley, J., Shahmanesh, M., 2019. Exploring People’s Candidacy for Mobile Health–Supported HIV Testing and Care Services in Rural KwaZulu-Natal, South Africa: Qualitative Study. J Med Internet Res 21, e15681. https://doi.org/10.2196/15681

Akilimali, N. A., Muema, D. M., Specht, C., Chang, C. C., Moosa, M.-Y. S., Levitz, S. M., … Ndung’u, T. (2019). Cryptococcosis-associated Immune Reconstitution Inflammatory Syndrome is associated with Dysregulation of IL-7/IL-7 Receptor Signaling Pathway in T-cells and Monocyte Activation: JAIDS Journal of Acquired Immune Deficiency Syndromes, 1. https://doi.org/10.1097/QAI.0000000000001946

Ardain, A., Domingo-Gonzalez, R., Das, S., Kazer, S. W., Howard, N. C., Singh, A., … Khader, S. A. (2019). Group 3 innate lymphoid cells mediate early protective immunity against tuberculosis. Nature, 570(7762), 528–532. https://doi.org/10.1038/s41586-019-1276-2
Ardain, A., Marakalala, M.J., Leslie, A., 2019. Tissue‐resident innate immunity in the lung. Immunology imm.13143. https://doi.org/10.1111/imm.13143

Ardain, A., Porterfield, J. Z., Kløverpris, H. N., & Leslie, A. (2019). Type 3 ILCs in Lung Disease. Frontiers in Immunology, 10. https://doi.org/10.3389/fimmu.2019.00092

Baisley, K., Seeley, J., Siedner, M., Koole, K., Matthews, P., Tanser, F., …, Shahmanesh, M. (2019). Findings from home‐based HIV testing and facilitated linkage after scale‐up of test and treat in rural South Africa: Young people still missing. HIV Medicine, hiv.12787. https://doi.org/10.1111/hiv.12787
Barnhart, D. A., Harling, G., Muya, A., Ortblad, K. F., Mashasi, I., Dambach, P., … Spiegelman, D. (2019). Structural, interpersonal, psychosocial, and behavioral risk factors for HIV acquisition among female bar workers in Dar es Salaam, Tanzania. AIDS Care, 1–10. https://doi.org/10.1080/09540121.2019.1612018
Barteit, S., Guzek, D., Jahn, A., Bärnighausen, T., Jorge, M. M., & Neuhann, F. (2019). Evaluation of e-learning for medical education in low- and middle-income countries: A systematic review. Computers & Education, 103726. https://doi.org/10.1016/j.compedu.2019.103726

Barteit, S., Jahn, A., Banda, S. S., Bärnighausen, T., Bowa, A., Chileshe, G., … Neuhann, F. (2019). E-Learning for Medical Education in Sub-Saharan Africa and Low-Resource Settings: Viewpoint. Journal of Medical Internet Research, 21(1), e12449. https://doi.org/10.2196/12449

Barteit, S., Neuhann, F., Bärnighausen, T., Lüders, S., Malunga, G., Chileshe, G., … Jahn, A. (2019). Perspectives of Nonphysician Clinical Students and Medical Lecturers on Tablet-Based Health Care Practice Support for Medical Education in Zambia, Africa: Qualitative Study. JMIR MHealth and UHealth, 7(1), e12637. https://doi.org/10.2196/12637

Barton, J. P., Rajkoomar, E., Mann, J. K., Murakowski, D. K., Toyoda, M., Mahiti, M., … Ndung’u, T. (2019). Modelling and in vitro testing of the HIV-1 Nef fitness landscape. Virus Evolution, 5(2), vez029–vez029. https://doi.org/10.1093/ve/vez029

Baschieri, A., Gordeev, V. S., Akuze, J., Kwesiga, D., Blencowe, H., Cousens, S., … Lawn, J. E. (2019). “Every Newborn-INDEPTH” (EN-INDEPTH) study protocol for a randomised comparison of household survey modules for measuring stillbirths and neonatal deaths in five Health and Demographic Surveillance sites. Journal of Global Health, 9(1). https://doi.org/10.7189/jogh.09.010901

Bekker, L.-G., Tatoud, R., Dabis, F., Feinberg, M., Kaleebu, P., Marovich, M., … Johnston, M. I. (2019). The complex challenges of HIV vaccine development require renewed and expanded global commitment. The Lancet, S0140673619326820. https://doi.org/10.1016/S0140-6736(19)32682-0
Birdthistle, I., Tanton, C., Tomita, A., Graaf, K. de, Schaffnit, S. B., Tanser, F., & Slaymaker, E. (2019). Recent levels and trends in HIV incidence rates among adolescent girls and young women in ten high-prevalence African countries: A systematic review and meta-analysis. The Lancet Global Health, 7(11), e1521–e1540. https://doi.org/10.1016/S2214-109X(19)30410-3
Bixby, H., Bentham, J., Zhou, B., Di Cesare, M., Paciorek, C. J., Bennett, J. E., …Gareta,D.,..Tanser,F.,.. NCD Risk Factor Collaboration (NCD-RisC). (2019). Rising rural body-mass index is the main driver of the global obesity epidemic in adults. Nature, 569(7755), 260–264. https://doi.org/10.1038/s41586-019-1171-x

Chimukangara, B., Lessells, R. J., Rhee, S.-Y., Giandhari, J., Kharsany, A. B. M., Naidoo, K., … de Oliveira, T. (2019). Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral Therapy-naive Adults in South Africa, 2000–2016: A Pooled Sequence Analysis. EClinicalMedicine. https://doi.org/10.1016/j.eclinm.2019.03.006

Closson, K., Dietrich, J. J., Beksinska, M., Gibbs, A., Hornschuh, S., Smith, T., … Kaida, A. (2019). Measuring sexual relationship power equity among young women and young men South Africa: Implications for gender-transformative programming. PLOS ONE, 14(9), e0221554. https://doi.org/10.1371/journal.pone.0221554
Concannon, D., Herbst, K., & Manley, E. (2019). Developing a Data Dashboard Framework for Population Health Surveillance: Widening Access to Clinical Trial Findings. JMIR Formative Research, 3(2), e11342. https://doi.org/10.2196/11342
Cromarty, R., Sigal, A., Liebenberg, L. J. P., McKinnon, L. R., Abdool Karim, S. S., Passmore, J.-A. S., & Archary, D. (2019). Diminished HIV Infection of Target CD4+ T Cells in a Toll-Like Receptor 4 Stimulated in vitro Model. Frontiers in Immunology, 10, 1705. https://doi.org/10.3389/fimmu.2019.01705

Cuadros, D. F., Li, J., Mukandavire, Z., Musuka, G. N., Branscum, A. J., Sartorius, B., … Tanser, F. (2019). Towards UNAIDS Fast-Track goals: targeting priority geographic areas for HIV prevention and care in Zimbabwe. AIDS, 33(2), 305–314. https://doi.org/10.1097/QAD.0000000000002052

Cuadros, D. F., Sartorius, B., Hall, C., Akullian, A., Bärnighausen, T., & Tanser, F. (2018). Capturing the spatial variability of HIV epidemics in South Africa and Tanzania using routine healthcare facility data. International Journal of Health Geographics, 17(1). https://doi.org/10.1186/s12942-018-0146-8

Cuadros, D. F., Tomita, A., Vandormael, A., Slotow, R., Burns, J. K., & Tanser, F. (2019). Spatial structure of depression in South Africa: A longitudinal panel survey of a nationally representative sample of households. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-018-37791-1

De Neve, J., Karlsson, O., Canavan, C.R., Chukwu, A., Adu‐Afarwuah, S., Bukenya, J., Darling, A.M., Harling, G., Moshabela, M., Killewo, J., Fink, G., Fawzi, W.W., Berhane, Y., 2019. Are out‐of‐school adolescents at higher risk of adverse health outcomes? Evidence from 9 diverse settings in sub‐Saharan Africa. Trop Med Int Health tmi.13328. https://doi.org/10.1111/tmi.13328
Desmond, C., Seeley, J., Groenewald, C., Ngwenya, N., Rich, K., & Barnett, T. (2019). Interpreting social determinants: Emergent properties and adolescent risk behaviour. PLOS ONE, 14(12), e0226241. https://doi.org/10.1371/journal.pone.0226241
Desmond, C., Viviers, A., Edward, T., Rich, K., Martin, P., & Richter, L. (2019). Priority-setting in the roll out of South Africa’s National Integrated ECD Policy. Early Years, 39(3), 276–294. https://doi.org/10.1080/09575146.2019.1572074

Di Tanna, G. L., Raza Khaki, A., Theron, G., McCarthy, K., Cox, H., Mupfumi, L., … Metcalfe, J. Z. (2019). Effect of Xpert MTB/RIF on clinical outcomes in routine care settings: individual patient data meta-analysis. The Lancet Global Health, 7(2), e191–e199. https://doi.org/10.1016/S2214-109X(18)30458-3

Dobra, A., Bärnighausen, T., Vandormael, A., & Tanser, F. (2019). A method for statistical analysis of repeated residential movements to link human mobility and HIV acquisition. PLOS ONE, 14(6), e0217284. https://doi.org/10.1371/journal.pone.0217284
Doyle, A. M., Mchunu, L., Koole, O., Mthembu, S., Dlamini, S., Ngwenya, N., … Seeley, J. (2019). Primary healthcare and school health service utilisation by adolescents and young adults in KwaZulu-Natal, South Africa. BMC Health Services Research, 19(1), 905. https://doi.org/10.1186/s12913-019-4559-2
Draper, C. E., Tomaz, S. A., Zihindula, G., Bunn, C., Gray, C. M., Hunt, K., … Wyke, S. (2019). Development, feasibility, acceptability and potential effectiveness of a healthy lifestyle programme delivered in churches in urban and rural South Africa. PloS One, 14(7), e0219787–e0219787. https://doi.org/10.1371/journal.pone.0219787
Dzomba, A., Tomita, A., Govender, K., & Tanser, F. (2019). Effects of Migration on Risky Sexual Behavior and HIV Acquisition in South Africa: A Systematic Review and Meta-analysis, 2000-2017. Aids and Behavior, 23(6), 1396–1430. https://doi.org/10.1007/s10461-018-2367-z

Dzomba, A., Tomita, A., Vandormael, A., Govender, K., & Tanser, F. (2019). Effect of ART scale-up and female migration intensity on risk of HIV acquisition: results from a population-based cohort in KwaZulu-Natal, South Africa. BMC Public Health, 19(1). https://doi.org/10.1186/s12889-019-6494-x

Elliott, T., Sanders, E. J., Doherty, M., Ndung’u, T., Cohen, M., Patel, P., Cairns, G., Rutstein, S. E., Ananworanich, J., Brown, C., & Fidler, S. (2019). Challenges of HIV diagnosis and management in the context of pre‐exposure prophylaxis (PrEP), post‐exposure prophylaxis (PEP), test and start and acute HIV infection: A scoping review. Journal of the International AIDS Society, 22(12). https://doi.org/10.1002/jia2.25419
Fakey Khan, D., Suleman, M., Baijnath, P., Perumal, R., Moodley, V., Mhlane, Z., … Wong, E. B. (2019). Multiple microbiologic tests for tuberculosis improve diagnostic yield of bronchoscopy in medically complex patients. AAS Open Research, 2, 25. https://doi.org/10.12688/aasopenres.12980.1
Feigin, V. L., Nichols, E., Alam, T., Bannick, M. S., Beghi, E., Blake, N., … Vos, T. (2019). Global, regional, and national burden of neurological disorders, 1990–2016: A systematic analysis for the Global Burden of Disease Study 2016. The Lancet Neurology, 18(5), 459–480. https://doi.org/10.1016/S1474-4422(18)30499-X
Frank, T. D., Carter, A., Jahagirdar, D., Biehl, M. H., Douwes-Schultz, D., Larson, S. L., … Murray, C. J. L. (2019). Global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2017, and forecasts to 2030, for 195 countries and territories: A systematic analysis for the Global Burden of Diseases, Injuries, and Risk Factors Study 2017. The Lancet HIV, S2352301819301961. https://doi.org/10.1016/S2352-3018(19)30196-1
Geldsetzer, P., Manne-Goehler, J., Marcus, M.-E., Ebert, C., Zhumadilov, Z., Wesseh, C. S., … Jaacks, L. M. (2019). The state of hypertension care in 44 low-income and middle-income countries: A cross-sectional study of nationally representative individual-level data from 1·1 million adults. The Lancet. https://doi.org/10.1016/S0140-6736(19)30955-9
George, S., & McGrath, N. (2019). Social support, disclosure and stigma and the association with non-adherence in the six months after antiretroviral therapy initiation among a cohort of HIV-positive adults in rural KwaZulu-Natal, South Africa*. Aids Care-Psychological and Socio-Medical Aspects of Aids/Hiv, 31(7), 875–884. https://doi.org/10.1080/09540121.2018.1549720
Global Burden of Disease Cancer Collaboration, Fitzmaurice, C., Abate, D., Abbasi, N., Abbastabar, H., Abd-Allah, F., … Murray, C. J. L. (2019). Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-Years for 29 Cancer Groups, 1990 to 2017: A Systematic Analysis for the Global Burden of Disease Study. JAMA Oncology. https://doi.org/10.1001/jamaoncol.2019.2996
Gosset, A., Protopopescu, C., Larmarange, J., Orne-Gliemann, J., McGrath, N., Pillay, D., … Boyer, S. (2019). Retention in Care Trajectories of HIV-Positive Individuals Participating in a Universal Test-and-Treat Program in Rural South Africa (ANRS 12249 TasP Trial): JAIDS Journal of Acquired Immune Deficiency Syndromes, 80(4), 375–385. https://doi.org/10.1097/QAI.0000000000001938
Gregson, J., Rhee, S. Y., Datir, R., Pillay, D., Perno, C. F., Derache, A., … Gupta, R. K. (2019). HIV-1 viral load is elevated in individuals with reverse transcriptase mutation M184V/I during virological failure of first line antiretroviral therapy and is associated with compensatory mutation L74I. The Journal of Infectious Diseases, jiz631. https://doi.org/10.1093/infdis/jiz631
Gumede, D., Ngwenya, N. B., Namukwaya, S., Bernays, S., & Seeley, J. (2019). A reflection on ethical and methodological challenges of using separate interviews with adolescent-older carer dyads in rural South Africa. BMC Medical Ethics, 20(1), 47. https://doi.org/10.1186/s12910-019-0383-9

Gupta, R. K., Abdul-Jawad, S., McCoy, L. E., Mok, H. P., Peppa, D., Salgado, M., … Olavarria, E. (2019). HIV-1 remission following CCR5Δ32/Δ32 haematopoietic stem-cell transplantation. Nature. https://doi.org/10.1038/s41586-019-1027-4

Hanifa, Y., Toro Silva, S., Karstaedt, A., Sahid, F., Charalambous, S., Chihota, V. N., … Grant, A. D. (2019). What causes symptoms suggestive of tuberculosis in HIV-positive people with negative initial investigations? The International Journal of Tuberculosis and Lung Disease. https://doi.org/10.5588/ijtld.18.0251

Harichund, C., Karim, Q. A., Kunene, P., Simelane, S., & Moshabela, M. (2019). Exploring factors that influence the integration of HIVST with HCT using a qualitative comparative cross-over design in KwaZulu-Natal, South Africa. Global Public Health, 14(9), 1275–1287. https://doi.org/10.1080/17441692.2019.1587638

Harling, G., Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., … Oldenburg, C. E. (2019). The influence of interviewers on survey responses among female sex workers in Zambia. BMC Medical Research Methodology, 19(1). https://doi.org/10.1186/s12874-019-0703-2

Harling, G., Muya, A., Ortblad, K. F., Mashasi, I., Dambach, P., Ulenga, N., … Spiegelman, D. (2019). HIV risk and pre-exposure prophylaxis interest among female bar workers in Dar es Salaam: cross-sectional survey. BMJ Open, 9(3), e023272. https://doi.org/10.1136/bmjopen-2018-023272
Houle, B., Rochat, T. J., Newell, M.-L., Stein, A., & Bland, R. M. (2019). Breastfeeding, HIV exposure, childhood obesity, and prehypertension: A South African cohort study. PLOS Medicine, 16(8), e1002889. https://doi.org/10.1371/journal.pmed.1002889
Inzaule, S. C., Hamers, R. L., Bertagnolio, S., Siedner, M. J., Rinke de Wit, T. F., & Gupta, R. K. (2019). Pretreatment HIV drug resistance in low- and middle-income countries. Future Virology, 14(6), 427–440. https://doi.org/10.2217/fvl-2018-0208

Khan, P. Y., Yates, T. A., Osman, M., Warren, R. M., van der Heijden, Y., Padayatchi, N., … Pym, A. (2019). Transmission of drug-resistant tuberculosis in HIV-endemic settings. The Lancet Infectious Diseases, 19(3), e77–e88. https://doi.org/10.1016/S1473-3099(18)30537-1

Larmarange, J., Diallo, M. H., McGrath, N., Iwuji, C., Plazy, M., Thiébaut, R., … Hontelez, J. (2019). Temporal trends of population viral suppression in the context of Universal Test and Treat: The ANRS 12249 TasP trial in rural South Africa. Journal of the International AIDS Society, 22(10). https://doi.org/10.1002/jia2.25402
Lee, G. Q., Reddy, K., Einkauf, K. B., Gounder, K., Chevalier, J. M., Dong, K. L., … Lichterfeld, M. (2019). HIV-1 DNA sequence diversity and evolution during acute subtype C infection. Nature Communications, 10(1), 2737. https://doi.org/10.1038/s41467-019-10659-2

Manne-Goehler, J., Geldsetzer, P., Agoudavi, K., Andall-Brereton, G., Aryal, K. K., Bicaba, B. W., … Jaacks, L. M. (2019). Health system performance for people with diabetes in 28 low- and middle-income countries: A cross-sectional study of nationally representative surveys. PLOS Medicine, 16(3), e1002751. https://doi.org/10.1371/journal.pmed.1002751

Manne‐Goehler, J., Siedner, M. J., Montana, L., Harling, G., Geldsetzer, P., Rohr, J., … Bärnighausen, T. W. (2019). Hypertension and diabetes control along the HIV care cascade in rural South Africa. Journal of the International AIDS Society, 22(3), e25213. https://doi.org/10.1002/jia2.25213
Mannell, J., Willan, S., Shahmanesh, M., Seeley, J., Sherr, L., & Gibbs, A. (2019). Why interventions to prevent intimate partner violence and HIV have failed young women in southern Africa. Journal of the International AIDS Society, 22(8), e25380. https://doi.org/10.1002/jia2.25380
Mathenjwa, T., Kim, H.-Y., Zuma, T., Shahmanesh, M., Seeley, J., Matthews, P., … Tanser, F. (2019). Home-based intervention to test and start (HITS) protocol: A cluster-randomized controlled trial to reduce HIV-related mortality in men and HIV incidence in women through increased coverage of HIV treatment. BMC Public Health, 19(1), 969. https://doi.org/10.1186/s12889-019-7277-0
Millar, J. R., Mvo, Z., Bengu, N., Fillis, R., Sprenger, K., Matthews, P. C., … Goulder, P. (2019). Increasing Diagnostic Uncertainties in Children With In Utero HIV Infection: The Pediatric Infectious Disease Journal, 1. https://doi.org/10.1097/INF.0000000000002315  
Millard, J. D., Mackay, E. A., Bonnett, L. J., & Davies, G. R. (2019). The impact of inclusion, dose and duration of pyrazinamide (PZA) on efficacy and safety outcomes in tuberculosis: Systematic review and meta-analysis protocol. Systematic Reviews, 8(1), 329. https://doi.org/10.1186/s13643-019-1231-1

Muenchhoff, M., Adland, E., Roider, J., Kløverpris, H., Leslie, A., Boehm, S., … Goulder, P. J. R. (2019). Differential Pathogen-Specific Immune Reconstitution in Antiretroviral Therapy-Treated Human Immunodeficiency Virus-Infected Children. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jiy668

Naidoo, A., Chirehwa, M., Ramsuran, V., McIlleron, H., Naidoo, K., Yende-Zuma, N., … Padayatchi, N. (2019). Effects of genetic variability on rifampicin and isoniazid pharmacokinetics in South African patients with recurrent tuberculosis. Pharmacogenomics, 20(4), 225–240. https://doi.org/10.2217/pgs-2018-0166
Naidoo, K. K., Ngubane, A., Gaza, P., Moodley, A., Ndung’u, T., & Thobakgale, C. F. (2019). Neutrophil Effector Functions Are Not Impaired in Duffy Antigen Receptor for Chemokines (DARC)-Null Black South Africans. Frontiers in Immunology, 10, 551. https://doi.org/10.3389/fimmu.2019.00551
Naidoo, K., Adeagbo, O., & Pleaner, M. (2019). Sexual and Reproductive Health Needs of Adolescent Girls and Young Women in Sub-Saharan Africa: Research, Policy, and Practice. SAGE Open, 9(3), 215824401985995. https://doi.org/10.1177/2158244019859951

Naidoo, L., Mzobe, Z., Jin, S. W., Rajkoomar, E., Reddy, T., Brockman, M. A., … Mann, J. K. (2019). Nef-mediated inhibition of NFAT following TCR stimulation differs between HIV-1 subtypes. Virology. https://doi.org/10.1016/j.virol.2019.02.011

Ndung’u, T., McCune, J. M., & Deeks, S. G. (2019). Why and where an HIV cure is needed and how it might be achieved. Nature, 576(7787), 397–405. https://doi.org/10.1038/s41586-019-1841-8
Ngwenya, N., Ambler, J., & Archary, M. (2019). Qualitative situational analysis of palliative care for adolescents with cancer and HIV in South Africa: Healthcare worker perceptions. Bmj Open, 9(1), e023225. https://doi.org/10.1136/bmjopen-2018-023225
Nimmo, C., Shaw, L. P., Doyle, R., Williams, R., Brien, K., Burgess, C., … Pym, A. S. (2019). Correction to: Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture. BMC Genomics, 20(1), 433. https://doi.org/10.1186/s12864-019-5841-8
Nkosi, B., Seeley, J., Ngwenya, N., Mchunu, S. L., Gumede, D., Ferguson, J., & Doyle, A. M. (2019). Exploring adolescents and young people’s candidacy for utilising health services in a rural district, South Africa. BMC Health Services Research, 19(1). https://doi.org/10.1186/s12913-019-3960-1

O’Donnell, M. R., Larsen, M. H., Brown, T. S., Jain, P., Munsamy, V., Wolf, A., … Pym, A. (2019). Early detection of emergent extensively drug resistant tuberculosis (XDR-TB) by flow cytometry-based phenotyping and whole genome sequencing. Antimicrobial Agents and Chemotherapy. https://doi.org/10.1128/AAC.01834-18

Ogongo, P., Porterfield, J. Z., & Leslie, A. (2019). Lung Tissue Resident Memory T-Cells in the Immune Response to Mycobacterium tuberculosis. Frontiers in Immunology, 10, 992. https://doi.org/10.3389/fimmu.2019.00992 

Ortblad, K. F., Harling, G., Chimbindi, N., Tanser, F., Salomon, J. A., & Bärnighausen, T. (2019). Does Incident Circumcision Lead to Risk Compensation? Evidence From a Population Cohort in KwaZulu-Natal, South Africa: JAIDS Journal of Acquired Immune Deficiency Syndromes, 80(3), 269–275. https://doi.org/10.1097/QAI.0000000000001912

Ortblad, K. F., Kibuuka Musoke, D., Ngabirano, T., Nakitende, A., Harling, G., Haberer, J. E., … Bärnighausen, T. (2019). The Effect of HIV Self-Testing Delivery Models on Female Sex Workers’ Sexual Behaviors: A Randomized Controlled Trial in Urban Uganda. AIDS and Behavior. https://doi.org/10.1007/s10461-019-02393-z

Osetinsky, B., Hontelez, J. A. C., Lurie, M. N., McGarvey, S. T., Bloomfield, G. S., Pastakia, S. D., … Galárraga, O. (2019). Epidemiological And Health Systems Implications Of Evolving HIV And Hypertension In South Africa And Kenya. Health Affairs, 38(7), 1173–1181. https://doi.org/10.1377/hlthaff.2018.05287
PANGEA Consortium and Rakai Health Sciences Program, Ratmann, O., Grabowski, M. K., Hall, M., Golubchik, T., Wymant, C., … Fraser, C. (2019). Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-09139-4
Patenaude, B. N., & Bärnighausen, T. (2019). Quality-adjusted life year weights and treatment bias: Theory and evidence from cognitive interviews. SAGE Open Medicine, 7, 205031211985698. https://doi.org/10.1177/2050312119856986
Phillips, A., Cambiano, V., Johnson, L., Nakagawa, F., Homan, R., Meyer-Rath, G., Rehle, T., Tanser, F., Moyo, S., Shahmanesh, M., Castor, D., Russell, E., Jamieson, L., Bansi-Matharu, L., Shroufi, A., Barnabas, R., Parikh, U. M., Mellors, J. W., & Revill, P. (2019). Potential impact and cost-effectiveness of condomless-sex-concentrated PrEP in KwaZulu-Natal accounting for drug resistance. The Journal of Infectious Diseases, jiz667. https://doi.org/10.1093/infdis/jiz667

Pillai, N., Foster, N., Hanifa, Y., Ndlovu, N., Fielding, K., Churchyard, G., … Vassall, A. (2019). Patient costs incurred by people living with HIV/AIDS prior to ART initiation in primary healthcare facilities in Gauteng, South Africa. PLOS ONE, 14(2), e0210622. https://doi.org/10.1371/journal.pone.0210622

Price, J., Willcox, M., Kabudula, C. W., Herbst, K., Hinton, L., Kahn, K., & Harnden, A. (2019). Care pathways during a child’s final illness in rural South Africa: Findings from a social autopsy study. PLOS ONE, 14(10), 1–17. https://doi.org/10.1371/journal.pone.0224284
Price, J., Willcox, M., Kabudula, C. W., Herbst, K., Kahn, K., & Harnden, A. (2019). Home deaths of children under 5 years in rural South Africa: a population‐based longitudinal study. Tropical Medicine & International Health, tmi.13239. https://doi.org/10.1111/tmi.13239
Quan, V., Toro-Silva, S., Sriruttan, C., Chetty, V., Chihota, V., Candfield, S., Vassall, A., Grant, A. D., Govender, N. P., & for GERMS-SA. (2019). Pathways to care and outcomes among hospitalised HIV-seropositive persons with cryptococcal meningitis in South Africa. PLOS ONE, 14(12), e0225742. https://doi.org/10.1371/journal.pone.0225742
Ramjee, G., Sartorius, B., Morris, N., Wand, H., Reddy, T., Yssel, J. D., & Tanser, F. (2019). A decade of sustained geographic spread of HIV infections among women in Durban, South Africa. BMC Infectious Diseases, 19(1), 500. https://doi.org/10.1186/s12879-019-4080-6

Reid, D., Shenoi, S., Singh, R., Wang, M., Patel, V., Das, R., … Bucala, R. (2019). Low Expression Macrophage Migration Inhibitory Factor (MIF) alleles and Tuberculosis in HIV infected South Africans. Cytokine: X, 100004. https://doi.org/10.1016/j.cytox.2019.100004

Rochat, T. J., Houle, B., Stein, A., Mitchell, J., & Bland, R. M. (2019). Maternal alcohol use and children’s emotional and cognitive outcomes in rural South Africa. Samj South African Medical Journal, 109(7), 526–534. https://doi.org/10.7196/SAMJ.2019.v109i6.13120 
Rohr, J. K., Manne-Goehler, J., Gómez-Olivé, F. X., Wagner, R. G., Rosenberg, M., Geldsetzer, P., … Salomon, J. A. (2019). HIV treatment cascade for older adults in rural South Africa. Sexually Transmitted Infections, sextrans-2018-053925. https://doi.org/10.1136/sextrans-2018-053925  

Roider, J., Ngoepe, A., Muenchhoff, M., Adland, E., Groll, A., Ndung’u, T., … Leslie, A. (2019). Increased Regulatory T-Cell Activity and Enhanced T-Cell Homeostatic Signaling in Slow Progressing HIV-infected Children. Frontiers in Immunology, 10. https://doi.org/10.3389/fimmu.2019.00213

Roider, J., Porterfield, J. Z., Ogongo, P., Muenchhoff, M., Adland, E., Groll, A., … Leslie, A. (2019). Plasma IL-5 but Not CXCL13 Correlates With Neutralization Breadth in HIV-Infected Children. Frontiers in Immunology, 10, 1497. https://doi.org/10.3389/fimmu.2019.01497

Rolland, M., McGrath, N., Tiendrebeogo, T., Larmarange, J., Pillay, D., Dabis, F., & Orne-Gliemann, J. (2019). No effect of test and treat on sexual behaviours at population level in rural South Africa: AIDS, 1. https://doi.org/10.1097/QAD.0000000000002104

Rossenkhan, R., Rolland, M., Labuschagne, J. P. L., Ferreira, R.-C., Magaret, C. A., Carpp, L. N., … Edlefsen, P. T. (2019). Combining Viral Genetics and Statistical Modeling to Improve HIV-1 Time-of-Infection Estimation towards Enhanced Vaccine Efficacy Assessment. Viruses-Basel, 11(7), 607. https://doi.org/10.3390/v11070607
Russell, S. L., Lamprecht, D. A., Mandizvo, T., Jones, T. T., Naidoo, V., Addicott, K. W., … Steyn, A. J. C. (2019). Compromised Metabolic Reprogramming Is an Early Indicator of CD8+ T Cell Dysfunction during Chronic Mycobacterium tuberculosis Infection. Cell Reports, 29(11), 3564-3579.e5. https://doi.org/10.1016/j.celrep.2019.11.034

Sié, A., Coulibaly, B., Adama, S., Ouermi, L., Dah, C., Tapsoba, C., … Oldenburg, C. E. (2019). Antibiotic Prescription Patterns among Children Younger than 5 Years in Nouna District, Burkina Faso. The American Journal of Tropical Medicine and Hygiene. https://doi.org/10.4269/ajtmh.18-0791

 

Siedner, M. J., Bwana, M. B., Asiimwe, S., Amanyire, G., Musinguzi, N., Castillo-Mancilla, J., … Wyatt, M. (2019). Timing of Antiretroviral Therapy and Systemic Inflammation in Sub-Saharan Africa: Results From the META Longitudinal Cohort Study. The Journal of Infectious Diseases, jiz259. https://doi.org/10.1093/infdis/jiz259
Siedner, M. J., Bwana, M. B., Asiimwe, S., Musinguzi, N., Castillo-Mancilla, J., Amanyire, G., … On behalf of the META Study Investigators. (2019). Inflammatory biomarkers prior to antiretroviral therapy as prognostic markers of 12-month mortality in South Africa and Uganda. AIDS, Publish Ahead of Print. Retrieved from https://journals.lww.com/aidsonline/Fulltext/publishahead/Inflammatory_biomarkers_prior_to_antiretroviral.96890.aspx  
Ssekubugu, R., Renju, J., Zaba, B., Seeley, J., Bukenya, D., Ddaaki, W., … Wringe, A. (2019). “He was no longer listening to me”: A qualitative study in six Sub-Saharan African countries exploring next-of-kin perspectives on caring following the death of a relative from AIDS. AIDS Care, 31(6), 754–760. https://doi.org/10.1080/09540121.2018.1537467
Tomita, A., Smith, C. M., Lessells, R. J., Pym, A., Grant, A. D., de Oliveira, T., & Tanser, F. (2019). Space-time clustering of recently-diagnosed tuberculosis and impact of ART scale-up: Evidence from an HIV hyper-endemic rural South African population. Scientific Reports, 9(1), 10724. https://doi.org/10.1038/s41598-019-46455-7
Tomita, A., Vandormael, A., Bärnighausen, T., Phillips, A., Pillay, D., De Oliveira, T., & Tanser, F. (2019). Socio-behavioural and community predictors of unsuppressed viral load: multi-level results from a hyper-endemic rural South African population. AIDS, 1. https://doi.org/10.1097/QAD.0000000000002100  
Vandormael, A., Akullian, A., Siedner, M., de Oliveira, T., Bärnighausen, T., & Tanser, F. (2019). Declines in HIV incidence among men and women in a South African population-based cohort. Nature Communications, 10(1), 5482. https://doi.org/10.1038/s41467-019-13473-y

Vandormael, A., Tanser, F., Cuadros, D., & Dobra, A. (2019). Estimating trends in the incidence rate with interval censored data and time-dependent covariates. Statistical Methods in Medical Research, 096228021982989. https://doi.org/10.1177/0962280219829892

Witham, M. D., Davies, J. I., Bärnighausen, T., Bountogo, M., Manne-Goehler, J., Payne, C. F., … Harling, G. (2019). Frailty and physical performance in the context of extreme poverty: A population-based study of older adults in rural Burkina Faso. Wellcome Open Research, 4, 135. https://doi.org/10.12688/wellcomeopenres.15455.1
Wong, E. B., Gold, M. C., Meermeier, E. W., Xulu, B. Z., Khuzwayo, S., Sullivan, Z. A., … Lewinsohn, D. M. (2019). TRAV1-2+ CD8+ T-cells including oligoconal expansions of MAIT cells are enriched in the airways in human tuberculosis. Communications Biology, 2(1), 203. https://doi.org/10.1038/s42003-019-0442-2

Wood, C. S., Thomas, M. R., Budd, J., Mashamba-Thompson, T. P., Herbst, K., Pillay, D., … Stevens, M. M. (2019). Taking connected mobile-health diagnostics of infectious diseases to the field. Nature, 566(7745), 467–474. https://doi.org/10.1038/s41586-019-0956-2

Yang, Y., McKhann, A., Chen, S., Harling, G., & Onnela, J.-P. (2019). Efficient vaccination strategies for epidemic control using network information. Epidemics, 27, 115–122. https://doi.org/10.1016/j.epidem.2019.03.002
Zhang, Y., Bärnighausen, T., & Eyal, N. (2019). Appropriate Health Resource Rationing in a Non-Ideal World: JAIDS Journal of Acquired Immune Deficiency Syndromes, 1. https://doi.org/10.1097/QAI.0000000000002127

Zhang, Y., Bärnighausen, T., & Eyal, N. (2019). When Global ART Budgets Cannot Cover All Patients, Who Should Be Eligible?: JAIDS Journal of Acquired Immune Deficiency Syndromes, 1. https://doi.org/10.1097/QAI.0000000000002017

2018 Publications

Ahmed, S., Autrey, J., Katz, I. T., Fox, M. P., Rosen, S., Onoya, D., … Bor, J. (2018). Why do people living with HIV not initiate treatment? A systematic review of qualitative evidence from low- and middle-income countries. Social Science & Medicine. https://doi.org/10.1016/j.socscimed.2018.05.048

Attaf, M., Malik, A., Severinsen, M.C., Roider, J., Ogongo, P., Buus, S., Ndung’u, T., Leslie, A., Kløverpris, H.N., Matthews, P.C., Sewell, A.K., Goulder, P. (2018). Major TCR Repertoire Perturbation by Immunodominant HLA-B*44:03-Restricted CMV-Specific T Cells. Frontiers in Immunology, 9. https://doi.org/10.3389/fimmu.2018.02539

Baisley, K., Chimbindi, N., Mthiyane, N., Floyd, S., McGrath, N., Pillay, D., … Shahmanesh, M. (2018). High HIV incidence and low uptake of HIV prevention services: The context of risk for young male adults prior to DREAMS in rural KwaZulu-Natal, South Africa. PLOS ONE, 13(12), e0208689. https://doi.org/10.1371/journal.pone.0208689

Baiyegunhi, O., Ndlovu, B., Ogunshola, F., Ismail, N., Walker, B. D., Ndung’u, T., & Ndhlovu, Z. M. (2018). Frequencies of circulating Th1-biased T follicular helper cells in acute HIV-1 infection correlate with the development of HIV-specific antibody responses and lower set point viral load. Journal of Virology, JVI.00659-18. https://doi.org/10.1128/JVI.00659-18

Barichievy, S., Naidoo, J., Boulle, M., Scholefield, J., Parihar, S. P., Coussens, A. K., … Mhlanga, M. M. (2017). Viral apoptosis evasion via the MAPK pathway by use of a host long noncoding RNA. https://doi.org/10.1101/153130

Beteck, R. M., Seldon, R., Coertzen, D., van der Watt, M. E., Reader, J., Mackenzie, J. S., … Haynes, R. K. (2018). Accessible and distinct decoquinate derivatives active against Mycobacterium tuberculosis and apicomplexan parasites. Communications Chemistry, 1(1). https://doi.org/10.1038/s42004-018-0062-7 

Birdthistle, I., Schaffnit, S. B., Kwaro, D., Shahmanesh, M., Ziraba, A., Kabiru, C. W., … Floyd, S. (2018). Evaluating the impact of the DREAMS partnership to reduce HIV incidence among adolescent girls and young women in four settings: a study protocol. BMC Public Health, 18(1).https://doi.org/10.1186/s12889-018-5789-7 https://doi.org/10.1186/s12889-018-5789-7

Bommer, C., Sagalova, V., Heesemann, E., Manne-Goehler, J., Atun, R., Bärnighausen, T., … Vollmer, S. (2018). Global Economic Burden of Diabetes in Adults: Projections From 2015 to 2030. Diabetes Care, dc171962. https://doi.org/10.2337/dc17-1962

Bond, V., Ngwenya, F., Murray, E., Ngwenya, N., Viljoen, L., Gumede, D., … Seeley, J. (2018). Value and Limitations of Broad Brush Surveys Used in Community-Randomized Trials in Southern Africa. Qualitative Health Research, 1049732318809940. https://doi.org/10.1177/1049732318809940

Brennan, A. T., Bor, J., Davies, M.-A., Wandeler, G., Prozesky, H., Fatti, G., … Fox, M. P. (2018). Drug Side Effects and Retention on HIV Treatment: a Regression Discontinuity Study of Tenofovir Implementation in South Africa and Zambia. American Journal of Epidemiology. https://doi.org/10.1093/aje/kwy093

Camlin, C. S., Cassels, S., & Seeley, J. (2018). Bringing population mobility into focus to achieve HIV prevention goals. Journal of the International AIDS Society, 21(S4), e25136. https://doi.org/10.1002/jia2.25136

Chang, A. Y., Haber, N., Bärnighausen, T., Herbst, K., Gareta, D., Pillay, D., & Salomon, J. A. (2018). Improving the validity of mathematical models for HIV elimination by incorporating empirical estimates of progression through the HIV treatment cascade: JAIDS Journal of Acquired Immune Deficiency Syndromes, https://doi.org/10.1097/QAI.0000000000001852

Chang, S. T., Chihota, V. N., Fielding, K. L., Grant, A. D., Houben, R. M., White, R. G., … Wagner, B. G. (2018). Small contribution of gold mines to the ongoing tuberculosis epidemic in South Africa: a modeling-based study. BMC Medicine, 16(1). https://doi.org/10.1186/s12913-018-3404-3

Chetty, T., Yapa, H. M. N., Herbst, C., Geldsetzer, P., Naidu, K. K., … Bärnighausen, T. (2018). The MONARCH intervention to enhance the quality of antenatal and postnatal primary health services in rural South Africa: protocol for a stepped-wedge cluster-randomised controlled trial. BMC Health Services Research, 18(1). https://doi.org/10.1186/s12913-018-3404-3

Chimbindi, N., Birdthistle, I., Shahmanesh, M., Osindo, J., Mushati, P., Ondeng’e, K., … Seeley, J. (2018). Translating DREAMS into practice: Early lessons from implementation in six settings. PLOS ONE, 13(12), e0208243. https://doi.org/10.1371/journal.pone.0208243

Chimbindi, N., Mthiyane, N., Birdthistle, I., Floyd, S., McGrath, N., Pillay, D., … Shahmanesh, M. (2018). Persistently high incidence of HIV and poor service uptake in adolescent girls and young women in rural KwaZulu-Natal, South Africa prior to DREAMS. PLOS ONE, 13(10), e0203193. https://doi.org/10.1371/journal.pone.0203193

Chimukangara, B., Kharsany, A. B., Lessells, R. J., Naidoo, K., Rhee, S.-Y., Manasa, J., ….Pillay, D, de Oliveira, T. (2018). Moderate to high levels of pre-treatment HIV drug resistance in KwaZulu-Natal Province, South Africa. AIDS Research and Human Retroviruses. https://doi.org/10.1089/AID.2018.0202

Chinta, K. C., Rahman, M. A., Saini, V., Glasgow, J. N., Reddy, V. P., Lever, J. M., … Steyn, A. J. C. (2018). Microanatomic Distribution of Myeloid Heme Oxygenase-1 Protects against Free Radical-Mediated Immunopathology in Human Tuberculosis. Cell Reports, 25(7), 1938-1952.e5. https://doi.org/10.1016/j.celrep.2018.10.073

Chung, A., Makuba, J. M., Ndlovu, B., Licht, A., Robinson, H., Ramlakhan, Y., … Alter, G. (2018). Viral control in chronic HIV-1 subtype C infection is associated with enrichment of p24 IgG1 with Fc effector activity: AIDS, 1. https://doi.org/10.1097/QAD.0000000000001812

Collier, D., Haddow, L., Brijkumar, J., Moosa, M.-Y., Benjamin, L., & Gupta, R. (2018). HIV Cerebrospinal Fluid Escape and Neurocognitive Pathology in the Era of Combined Antiretroviral Therapy: What Lies Beneath the Tip of the Iceberg in Sub-Saharan Africa? Brain Sciences, 8(10), 190. https://doi.org/10.3390/brainsci8100190

Coltart, C. E. M., Hoppe, A., Parker, M., Dawson, L., Amon, J. J., Simwinga, M., … Zimmerman, R. (2018). Ethical considerations in global HIV phylogenetic research. The Lancet HIV. https://doi.org/10.1016/S2352-3018(18)30134-6

Cuadros, D. F., Sartorius, B., Hall, C., Akullian, A., Bärnighausen, T., & Tanser, F. (2018). Capturing the spatial variability of HIV epidemics in South Africa and Tanzania using routine healthcare facility data. International Journal of Health Geographics, 17(1). https://doi.org/10.1186/s12942-018-0146-8

Cumming, B. M., Addicott, K. W., Adamson, J. H., & Steyn, A. J. (2018). Mycobacterium tuberculosis induces decelerated bioenergetic metabolism in human macrophages. ELife, 7. https://doi.org/10.7554/eLife.39169

De Neve, J.-W., Karlsson, O., Coetzee, L., Schröder, H., Subramanian, S., Bärnighausen, T., & Vollmer, S. (2018). Antiretroviral therapy coverage associated with increased co-residence between elderly people and prime-age adults in Africa: AIDS, 1. https://doi.org/10.1097/QAD.0000000000001917

Deiner, M. S., Keenan, J. D., Diarra, A., Sié, A., Zongo, A., Millogo, O., … Chodosh, J. (2018). Seasonal and Temporal Trends in Childhood Conjunctivitis in Burkina Faso. The American Journal of Tropical Medicine and Hygiene. https://doi.org/10.4269/ajtmh.17-0642

Derache, A., Iwuji, C. C., Baisley, K., Danaviah, S., Marcelin, A.-G., Calvez, V., … Pillay, D. (2018). Impact of next generation sequencing defined HIV pre-treatment drug resistance on virological outcomes in the ANRS 12249 treatment as prevention trial. Clinical Infectious Diseases. https://doi.org/10.1093/cid/ciy881

Derache, A., Iwuji, C.C., Danaviah, S., Giandhari, J., Marcelin, A.-G., Calvez, V., de Oliveira, T., Dabis, F., Pillay, D., Gupta, R.K. (2018). Predicted antiviral activity of tenofovir versus abacavir in combination with a cytosine analogue and the integrase inhibitor dolutegravir in HIV-1-infected South African patients initiating or failing first-line ART. Journal of Antimicrobial Chemotherapy. https://doi.org/10.1093/jac/dky428

Dong, K. L., Moodley, A., Kwon, D. S., Ghebremichael, M. S., Dong, M., Ismail, N., … Ndung’u, T. (2018). Detection and treatment of Fiebig stage I HIV-1 infection in young at-risk women in South Africa: a prospective cohort study. The Lancet HIV, 5(1), e35–e44. https://doi.org/10.1016/S2352-3018(17)30146-7

Doyle, A. M., Floyd, S., Baisley, K., Orindi, B., Kwaro, D., Mthiyane, T. N., … Birdthistle, I. (2018). Who are the male sexual partners of adolescent girls and young women? Comparative analysis of population data in three settings prior to DREAMS roll-out. PLOS ONE, 13(9), e0198783. https://doi.org/10.1371/journal.pone.0198783

Dzomba, A., Govender, K., Mashamba-Thompson, T. P., & Tanser, F. (2018). Mobility and increased risk of HIV acquisition in South Africa: a mixed-method systematic review protocol. Systematic Reviews, 7(1). https://doi.org/10.1186/s13643-018-0703-z

Ekoru, K., Young, E. H., Dillon, D. G., Gurdasani, D., Stehouwer, N., Faurholt-Jepsen, D., … Sandhu, M. S. (2018). HIV treatment is associated with a twofold higher probability of raised triglycerides: pooled analyses in 21 023 individuals in sub-Saharan Africa. Global Health, Epidemiology and Genomics, 3. https://doi.org/10.1017/gheg.2018.7

Foo, C. S., Lupien, A., Kienle, M., Vocat, A., Benjak, A., Sommer, R., … Cole, S. T. (2018). Arylvinylpiperazine Amides, a New Class of Potent Inhibitors Targeting QcrB of Mycobacterium tuberculosis. MBio, 9(5). https://doi.org/10.1128/mBio.01276-18

Francis, S. C., Mthiyane, T. N., Baisley, K., Mchunu, S. L., Ferguson, J. B., Smit, T., … Shahmanesh, M. (2018). Prevalence of sexually transmitted infections among young people in South Africa: A nested survey in a health and demographic surveillance site. PLOS Medicine15(2), e1002512. https://doi.org/10.1371/journal.pmed.1002512

Frank, D. J., Horne, D. J., Dutta, N. K., Shaku, M. T., Madensein, R., Hawn, T. R., … Tanvir, Z. (2018). Remembering the Host in Tuberculosis Drug Development. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jiy712

Geldsetzer, P., Francis, J. M., Sando, D., Asmus, G., Lema, I. A., Mboggo, E., … Bärnighausen, T. (2018). Community delivery of antiretroviral drugs: A non-inferiority cluster-randomized pragmatic trial in Dar es Salaam, Tanzania. PLOS Medicine, 15(9), e1002659. https://doi.org/10.1371/journal.pmed.1002659

Geldsetzer, P., Manne-Goehler, J., Theilmann, M., Davies, J. I., Awasthi, A., Vollmer, S., … Atun, R. (2018). Diabetes and Hypertension in India: A Nationally Representative Study of 1.3 Million Adults. JAMA Internal Medicine. https://doi.org/10.1001/jamainternmed.2017.8094

Geldsetzer, P., Manne-Goehler, J., Theilmann, M., Davies, J. I., Awasthi, A., Danaei, G., … Atun, R. (2018). Geographic and sociodemographic variation of cardiovascular disease risk in India: A cross-sectional study of 797,540 adults. PLOS Medicine, 15(6), e1002581. https://doi.org/10.1371/journal.pmed.1002581

Geldsetzer, P., Vaikath, M., Wagner, R., Rohr, J. K., Montana, L., Gómez-Olivé, F. X., … Berkman, L. F. (2018). Depressive Symptoms and their Relation to Age and Chronic diseases among middle-aged and Older Adults in rural South Africa. The Journals of Gerontology: Series A. https://doi.org/10.1093/gerona/gly145

Ginsburg, C., Bocquier, P., Béguy, D., Afolabi, S., Kahn, K., Obor, D., … Collinson, M. A. (2018). Association between internal migration and epidemic dynamics: an analysis of cause-specific mortality in Kenya and South Africa using health and demographic surveillance data. BMC Public Health, 18(1). https://doi.org/10.1186/s12889-018-5851-5

Günthard, H. F., Calvez, V., Paredes, R., Pillay, D., Shafer, R. W., Wensing, A. M., … Richman, D. D. (2018). Human Immunodeficiency Virus Drug Resistance: 2018 Recommendations of the International Antiviral Society–USA Panel. Clinical Infectious Diseases. https://doi.org/10.1093/cid/ciy463

Haber, N., Harling, G., Cohen, J., Mutevedzi, T., Tanser, F., Gareta, D., … Fink, G. (2018). List randomization for eliciting HIV status and sexual behaviors in rural KwaZulu-Natal, South Africa: a randomized experiment using known true values for validation. BMC Medical Research Methodology, 18(1). https://doi.org/10.1186/s12874-018-0507-9

Harling, G., Gumede, D., Shahmanesh, M., Pillay, D., Bärnighausen, T. W., & Tanser, F. (2018). Sources of social support and sexual behaviour advice for young adults in rural South Africa. BMJ Global Health, 3(6), e000955. https://doi.org/10.1136/bmjgh-2018-000955

Hontelez, J. A. C., Bor, J., Tanser, F. C., Pillay, D., Moshabela, M., & Bärnighausen, T. (2018). HIV Treatment Substantially Decreases Hospitalization Rates: Evidence From Rural South Africa. Health Affairs, 37(6), 997–1004. https://doi.org/10.1377/hlthaff.2017.0820

Hu, J., Geldsetzer, P., Steele, S. J., Matthews, P., Ortblad, K., Solomon, T., … Bärnighausen, T. (2018). The impact of lay counselors on HIV testing rates: Quasi-experimental evidence from lay counselor redeployment in KwaZulu-Natal, South Africa. AIDS, 1. https://doi.org/10.1097/QAD.0000000000001924

Iwuji, C., McGrath, N., Calmy, A., Dabis, F., Pillay, D., Newell, M.-L., … Porter, K. (2018). Universal test and treat is not associated with sub-optimal antiretroviral therapy adherence in rural South Africa: the ANRS 12249 TasP trial. Journal of the International AIDS Society, 21(6), e25112. https://doi.org/10.1002/jia2.25112

Kaida, A., Dietrich, J. J., Laher, F., Beksinska, M., Jaggernath, M., Bardsley, M., … Gray, G. (2018). A high burden of asymptomatic genital tract infections undermines the syndromic management approach among adolescents and young adults in South Africa: implications for HIV prevention efforts. BMC Infectious Diseases, 18(1). https://doi.org/10.1186/s12879-018-3380-6

Karat, A. S., Maraba, N., Tlali, M., Charalambous, S., Chihota, V. N., Churchyard, G. J., … Grant, A. D. (2018). Performance of verbal autopsy methods in estimating HIV-associated mortality among adults in South Africa. BMJ Global Health, 3(4), e000833. https://doi.org/10.1136/bmjgh-2018-000833

Kim, J. T., Chang, E., Sigal, A., & Baltimore, D. (2018). Dendritic cells efficiently transmit HIV to T Cells in a tenofovir and raltegravir insensitive manner. PLOS ONE, 13(1), e0189945. https://doi.org/10.1371/journal.pone.0189945

Kluberg, S. A., Fox, M. P., LaValley, M., Pillay, D., Bärnighausen, T., & Bor, J. (2018). Do ART eligibility expansions crowd out the sickest? Evidence from rural South Africa. Tropical Medicine & International Health. https://doi.org/10.1111/tmi.13122

Kufa, T., Fielding, K. L., Hippner, P., Kielmann, K., Vassall, A., Churchyard, G. J., … Charalambous, S. (2018). An intervention to optimise the delivery of integrated tuberculosis and HIV services at primary care clinics: results of the MERGE cluster randomised trial. Contemporary Clinical Trials, 72, 43–52. https://doi.org/10.1016/j.cct.2018.07.013

Larmarange, J., Diallo, M. H., McGrath, N., Iwuji, C., Plazy, M., Thiébaut, R., … the ANRS 12249 TasP Study Group. (2018). The impact of population dynamics on the population HIV care cascade: results from the ANRS 12249 Treatment as Prevention trial in rural KwaZulu-Natal (South Africa). Journal of the International AIDS Society, 21, e25128. https://doi.org/10.1002/jia2.25128

Liu, Y., Ndumnego, O., Chen, T., Kim, R., Jenny-Avital, E., Ndung’u, T., … Achkar, J. (2018). Soluble CD14 as a Diagnostic Biomarker for Smear-Negative HIV-Associated Tuberculosis. Pathogens, 7(1), 26. https://doi.org/10.3390/pathogens7010026

Lozano, R., Fullman, N., Abate, D., Abay, S. M., Abbafati, C., Abbasi, N., …Tanser, F., Bärnighausen T…. Murray, C. J. L. (2018). Measuring progress from 1990 to 2017 and projecting attainment to 2030 of the health-related Sustainable Development Goals for 195 countries and territories: a systematic analysis for the Global Burden of Disease Study 2017. The Lancet, 392(10159), 2091–2138. https://doi.org/10.1016/S0140-6736(18)32281-5

Manne-Goehler, J., Rohr, J., Montana, L., Siedner, M., Harling, G., Gómez-Olivé, F. X., … Bärnighausen, T. W. (2018). ART Denial: Results of a Home-Based Study to Validate Self-reported Antiretroviral Use in Rural South Africa. AIDS and Behavior. https://doi.org/10.1007/s10461-018-2351-7

Maraba, N., Chihota, V., McCarthy, K., Churchyard, G. J., & Grant, A. D. (2018). Linkage to care among adults being investigated for tuberculosis in South Africa: pilot study of a case manager intervention. BMJ Open, 8(5), e021111. https://doi.org/10.1136/bmjopen-2017-021111

McCarthy, K., Fielding, K., Churchyard, G. J., & Grant, A. D. (2018). Empiric tuberculosis treatment in South African primary health care facilities - for whom, where, when and why: Implications for the development of tuberculosis diagnostic tests. PLOS ONE, 13(1), e0191608. https://doi.org/10.1371/journal.pone.0191608

McGovern, M., Canning, D., & Bärnighausen, T. (2018). Accounting for non-response bias using participation incentives and survey design: An application using gift vouchers. Economics Letters. https://doi.org/10.1016/j.econlet.2018.07.040

Meyer-Rath, G., McGillen, J. B., Cuadros, D. F., Hallett, T. B., Bhatt, S., Wabiri, N., … Rehle, T. (2018). Targeting the right interventions to the right people and places: the role of geospatial analysis in HIV programme planning. AIDS, 1. https://doi.org/10.1097/QAD.0000000000001792

Moazen, B., Saeedi Moghaddam, S., Silbernagl, M. A., Lotfizadeh, M., Bosworth, R. J., Alammehrjerdi, Z., … Dolan, K. A. (2018). Prevalence of Drug Injection, Sexual Activity, Tattooing, and Piercing Among Prison Inmates. Epidemiologic Reviews, mxy002–mxy002. https://doi.org/10.1093/epirev/mxy002

Mori, M., Leitman, E., Walker, B., Ndung’u, T., Carrington, M., & Goulder, P. (2018). Impact of HLA allele-KIR pairs on HIV clinical outcome in South Africa. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jiy692

Mukora, R., Tlali, M., Monkwe, S., Charalambous, S., Karat, A. S., Fielding, K. L., … Vassall, A. (2018). Cost of point-of-care lateral flow urine lipoarabinomannan antigen testing in HIV-positive adults in South Africa. The International Journal of Tuberculosis and Lung Disease, 22(9), 1082–1087. https://doi.org/10.5588/ijtld.18.0046

Naidoo, N., Pillay, B., Bubb, M., Pym, A., Chiliza, T., Naidoo, K., … Pillay, M. (2018). Evaluation of a synthetic peptide for the detection of anti- Mycobacterium tuberculosis curli pili IgG antibodies in patients with pulmonary tuberculosis. Tuberculosis, 109, 80–84. https://doi.org/10.1016/j.tube.2018.01.007

Ndung’u, T., Dong, K. L., Kwon, D. S., & Walker, B. D. (2018). A FRESH approach: Combining basic science and social good. Science Immunology, 3(27), eaau2798. https://doi.org/10.1126/sciimmunol.aau2798

Ngwenya, N., Gumede, D., Shahmanesh, M., McGrath, N., Grant, A., & Seeley, J. (2018). Community perceptions of the socio-economic structural context influencing HIV and TB risk, prevention and treatment in a high prevalence area in the era of antiretroviral therapy. African Journal of AIDS Research, 17(1), 72–81. https://doi.org/10.2989/16085906.2017.1415214

Ogunshola, F., Anmole, G., Miller, R. L., Goering, E., Nkosi, T., Muema, D., … Ndhlovu, Z. M. (2018). Dual HLA B*42 and B*81-reactive T cell receptors recognize more diverse HIV-1 Gag escape variants. Nature Communications, 9(1). https://doi.org/10.1038/s41467-018-07209-7

Ojwach, D. B. A., MacMillan, D., Reddy, T., Novitsky, V., Brumme, Z. L., Brockman, M. A., … Mann, J. K. (2018). Pol-driven replicative capacity impacts disease progression in HIV-1 subtype C infection. Journal of Virology, JVI.00811-18. https://doi.org/10.1128/JVI.00811-18

Oldenburg, C. E., Bor, J., Harling, G., Tanser, F., Mutevedzi, T., Shahmanesh, M., … Bärnighausen, T. (2018). Impact of early antiretroviral therapy eligibility on HIV acquisition: Household-level evidence from rural South Africa. AIDS, 1. https://doi.org/10.1097/QAD.0000000000001737

Oldenburg, C. E., Ortblad, K. F., Chanda, M. M., Mwale, M., Chongo, S., Kanchele, C., … Bärnighausen, T. (2018). Intimate Partner Violence and Antiretroviral Therapy Initiation Among Female Sex Workers Newly Diagnosed with HIV in Zambia: A Prospective Study. JAIDS Journal of Acquired Immune Deficiency Syndromes, 1. https://www.ncbi.nlm.nih.gov/pubmed/30142141

Oldenburg, C., Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kamungoma, N., … Bärnighausen, T. (2018). Effect of HIV self-testing on the number of sexual partners among female sex workers in Zambia: A randomized controlled trial. AIDS, 1. https://doi.org/10.1097/QAD.0000000000001740

Ortblad, K. F., Bärnighausen, T., Chimbindi, N., Masters, S. H., Salomon, J. A., & Harling, G. (2018). Predictors of male circumcision incidence in a traditionally non-circumcising South African population-based cohort. PLOS ONE, 13(12), e0209172. https://doi.org/10.1371/journal.pone.0209172

Ortblad, K. F., Chanda, M. M., Musoke, D. K., Ngabirano, T., Mwale, M., Nakitende, A., … Oldenburg, C. E. (2018). Acceptability of HIV self-testing to support pre-exposure prophylaxis among female sex workers in Uganda and Zambia: results from two randomized controlled trials. BMC Infectious Diseases, 18(1). https://doi.org/10.1186/s12879-018-3415-z

Pacl, H. T., Reddy, V. P., Saini, V., Chinta, K. C., & Steyn, A. J. (2018). Host-pathogen redox dynamics modulate Mycobacterium tuberculosis pathogenesis. Pathogens and Disease. https://doi.org/10.1093/femspd/fty036

Patten, G., Schomaker, M., Davies, M.-A., Rabie, H., van Zyl, G., Technau, K., … Fairlie, L. (2018). What Should we do When HIV-Positive Children Fail First-Line Combination Antiretroviral Therapy? A Comparison of 4 ART Management Strategies: The Pediatric Infectious Disease Journal, 1. https://doi.org/10.1097/INF.0000000000002156

Perriat, D., Balzer, L., Hayes, R., Lockman, S., Walsh, F., Ayles, H., … the Universal Test and Treat Trials Consortium (UT3C). (2018). Comparative assessment of five trials of universal HIV testing and treatment in sub-Saharan Africa. Journal of the International AIDS Society, 21(1), e25048. https://doi.org/10.1002/jia2.25048

Perriat, D., Plazy, M., Gumede, D., Boyer, S., Pillay, D., Dabis, F., Seeley,J., Orne-Gliemann, J.; ANRS 12249 TasP Study Group.… for the ANRS 12249 TasP Study Group. (2018). “If you are here at the clinic, you do not know how many people need help in the community”: Perspectives of home-based HIV services from health care workers in rural KwaZulu-Natal, South Africa in the era of universal test-and-treat. PLOS ONE, 13(11), e0202473. https://doi.org/10.1371/journal.pone.0202473

Phillips, A. N., Venter, F., Havlir, D., Pozniak, A., Kuritzkes, D., Wensing, A., … Calmy, A. (2018). Risks and benefits of dolutegravir-based antiretroviral drug regimens in sub-Saharan Africa: a modelling study. The Lancet HIV, 6(2), e116–e127. https://doi.org/10.1016/S2352-3018(18)30317-5

Pillay, K., Gardner, M., Gould, A., Otiti, S., Mullineux, J., Bärnighausen, T., & Matthews, P. M. (2018). Long term effect of primary health care training on HIV testing: A quasi-experimental evaluation of the Sexual Health in Practice (SHIP) intervention. PLOS ONE, 13(8), e0199891. https://doi.org/10.1371/journal.pone.0199891

Poole, D. N., Hedt-Gauthier, B., Liao, S., Raymond, N. A., & Bärnighausen, T. (2018). Major depressive disorder prevalence and risk factors among Syrian asylum seekers in Greece. BMC Public Health, 18(1). https://doi.org/10.1186/s12889-018-5822-x

Ramsuran, V., Naranbhai, V., Horowitz, A., Qi, Y., Martin, M. P., Yuki, Y., … Carrington, M. (2018). Elevated HLA-A expression impairs HIV control through inhibition of NKG2A-expressing cells. Science, 359(6371), 86–90. https://doi.org/10.1126/science.aam8825

Ray, P. C., Bayliss, T., Prosser, G. A., Harrison, J. R., Green, K., Soares de Melo, C., … Boshoff, H. I. M. (2018). 2-Mercapto-quinazolinones as inhibitors of NDH-2 and Mycobacterium tuberculosis: Structure-activity relationships, mechanism of action and ADME characterization. ACS Infectious Diseases. https://doi.org/10.1021/acsinfecdis.7b00275

Reddy, V. P., Chinta, K. C., Saini, V., Glasgow, J. N., Hull, T. D., Traylor, A., … Steyn, A. J. C. (2018). Ferritin H Deficiency in Myeloid Compartments Dysregulates Host Energy Metabolism and Increases Susceptibility to Mycobacterium tuberculosis Infection. Frontiers in Immunology, 9. https://doi.org/10.3389/fimmu.2018.00860

Rickman, H. M., Miller, R. F., Morris-Jones, S., Kellgren, L., Edwards, S. G., & Grant, A. D. (2018). Missed opportunities for tuberculosis prevention among patients accessing a UK HIV service. International Journal of STD & AIDS, 095646241877301. https://doi.org/10.1177/0956462418773010

Roider, J., Maehara, T., Ngoepe, A., Ramsuran, D., Muenchhoff, M., Adland, E., … Leslie, A. (2018). High-Frequency, Functional HIV-Specific T-Follicular Helper and Regulatory Cells Are Present Within Germinal Centers in Children but Not Adults. Frontiers in Immunology, 9. https://doi.org/10.3389/fimmu.2018.01975 

Rosenberg, M. S., Gómez-Olivé, F. X., Rohr, J. K., Kahn, K., & Bärnighausen, T. W. (2018). Are circumcised men safer sex partners? Findings from the HAALSI cohort in rural South Africa. PLOS ONE, 13(8), e0201445. https://doi.org/10.1371/journal.pone.0201445

Seipone, I. D., Singh, R., Patel, V. B., Singh, A., Gordon, M. L., Muema, D. M., … Ndung’u, T. (2018). Tuberculous meningitis is associated with higher cerebrospinal HIV-1 viral loads compared to other HIV-1-associated meningitides. PLOS ONE, 13(2), e0192060. https://doi.org/10.1371/journal.pone.0192060

Sié, A., Porco, T. C., Dah, C., Lietman, T. M., Keenan, J. D., Ouermi, L., … Snyder, B. M. (2018). Effect of Antibiotics on Short-Term Growth among Children in Burkina Faso: A Randomized Trial. The American Journal of Tropical Medicine and Hygiene. https://doi.org/10.4269/ajtmh.18-0342

Siedner, M. J., & Triant, V. (2018). Undetectable = Untransmittable and Your Health: The personal benefits of early and continuous therapy for HIV infection. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jiy445

Siedner, M. J., Baisley, K., Orne-Gliemann, J., Pillay, D., Koole, O., Wong, E. B., … Bachmann, M. (2018). Linkage to primary care after home-based blood pressure screening in rural KwaZulu-Natal, South Africa: a population-based cohort study. BMJ Open, 8(12), e023369. https://doi.org/10.1136/bmjopen-2018-023369

Smith, C. M., Lessells, R., Grant, A. D., Herbst, K., & Tanser, F. (2018). Spatial clustering of drug-resistant tuberculosis in Hlabisa subdistrict, KwaZulu-Natal, 2011–2015. The International Journal of Tuberculosis and Lung Disease22(3), 287–293. https://doi.org/10.5588/ijtld.17.0457

Sweeney, S., Mukora, R., Candfield, S., Guinness, L., Grant, A. D., & Vassall, A. (2018). Measuring income for catastrophic cost estimates: Limitations and policy implications of current approaches. Social Science & Medicine, 215, 7–15. https://doi.org/10.1016/j.socscimed.2018.08.041

Tanser, F., Azongo, D. K., Vandormael, A., Bärnighausen, T., & Appleton, C. (2018). Impact of the scale-up of piped water on urogenital schistosomiasis infection in rural South Africa. ELife, 7, e33065. https://doi.org/10.7554/eLife.33065

Tlou, B., Sartorius, B., & Tanser, F. (2018). Investigating risk factors for under-five mortality in an HIV hyper-endemic area of rural South Africa, from 2000-2014. PLOS ONE, 13(11), e0207294. https://doi.org/10.1371/journal.pone.0207294

Tlou, B., Sartorius, B., Tanser, F., 2018. Effect of timing of mother’s death on child survival in a rural HIV hyper-endemic South African population. BMC Public Health,18.  https://doi.org/10.1186/s12889-018-6152-8

van der Heijden, Y. F., Karim, F., Chinappa, T., Mufamadi, G., Zako, L., Shepherd, B. E., … Pym, A. S. (2018). Older age at first tuberculosis diagnosis is associated with tuberculosis recurrence in HIV-negative persons. The International Journal of Tuberculosis and Lung Disease, 22(8), 871–877. https://doi.org/10.5588/ijtld.17.0766

Walker-Sperling, V., Ramsuran, V., Martin, M., Naranbhai, V., Li, H., Anderson, S. K., … Carrington, M. (2018). P069UTR SNPS rs111686073 and rs73410010 independently modify expression of tapasin in blacks. Human Immunology, 79, 113. https://doi.org/10.1016/j.humimm.2018.07.128

Wang, Z., Cumming, B. M., Mao, C., Zhu, Y., Lu, P., Steyn, A. J. C., … Hu, Y. (2018). RbpA and σ B association regulates polyphosphate levels to modulate mycobacterial isoniazid-tolerance: RbpA and σ B associate to regulate INH-tolerance. Molecular Microbiology. https://doi.org/10.1111/mmi.13952

Yoo, H., Lee, J., Yim, J.-J., Bärnighausen, T., Tanser, F., & Park, S. K. (2018). Effect of the Number of Pregnancies on Mortality Risk in HIV-Infected Women: a Prospective Cohort Study in Rural KwaZulu-Natal, South Africa. AIDS and Behavior. https://doi.org/10.1007/s10461-018-2232-0

Yoon, H. A., Nakouzi, A., Chang, C. C., Kuniholm, M. H., Carreño, L. J., Wang, T., … Pirofski, L. (2018). Association between plasma antibody responses and risk for Cryptococcus-associated immune reconstitution inflammatory syndrome. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jiy447

2017 Publications

Aicken, C. R. H., Sutcliffe, L. J., Gibbs, J., Tickle, L. J., Hone, K., Harding-Esch, E. M., … Shahmanesh, M. (2017). Using the eSexual Health Clinic to access chlamydia treatment and care via the internet: a qualitative interview study. Sexually Transmitted Infections. https://doi.org/10.1136/sextrans-2017-053227

Aicken, C. R. H., Sutcliffe, L. J., Gibbs, J., Tickle, L. J., Hone, K., Harding-Esch, E. M., … Shahmanesh, M. (2017). Using the eSexual Health Clinic to access chlamydia treatment and care via the internet: a qualitative interview study. Sexually Transmitted Infections. https://doi.org/10.1136/sextrans-2017-053227

Akilimali, N. A., Chang, C. C., Muema, D. M., Reddy, T., Moosa, M.-Y. S., Lewin, S. R., … Ndung’u, T. (2017). Plasma But Not Cerebrospinal Fluid Interleukin 7 and Interleukin 5 Levels Pre–Antiretroviral Therapy Commencement Predict Cryptococcosis-Associated Immune Reconstitution Inflammatory Syndrome. Clinical Infectious Diseases, 65(9), 1551–1559. https://doi.org/10.1093/cid/cix598

Akilimali, N. A., Chang, C. C., Muema, D. M., Reddy, T., Moosa, M.-Y. S., Lewin, S. R., … Ndung’u, T. (2017). Plasma But Not Cerebrospinal Fluid Interleukin 7 and Interleukin 5 Levels Pre–Antiretroviral Therapy Commencement Predict Cryptococcosis-Associated Immune Reconstitution Inflammatory Syndrome. Clinical Infectious Diseases, 65(9), 1551–1559. https://doi.org/10.1093/cid/cix598

Akullian, A., Bershteyn, A., Klein, D., Vandormael, A., Bärnighausen, T., & Tanser, F. (2017). Sexual partnership age pairings and risk of HIV acquisition in rural South Africa: AIDS, 31(12), 1755–1764. https://doi.org/10.1097/QAD.0000000000001553

Akullian, A., Bershteyn, A., Klein, D., Vandormael, A., Bärnighausen, T., & Tanser, F. (2017). Sexual partnership age pairings and risk of HIV acquisition in rural South Africa: AIDS, 31(12), 1755–1764. https://doi.org/10.1097/QAD.0000000000001553

Ambia, J., Renju, J., Wringe, A., Todd, J., Geubbels, E., Nakiyingi-Miiro, J., … Mee, P. (2017). From policy to practice: Exploring the implementation of antiretroviral therapy access and retention policies between 2013 and 2016 in six sub-Saharan African countries. Bmc Health Services Research, 17, 758. https://doi.org/10.1186/s12913-017-2678-1
Baernighausen, T., Oldenburg, C., Tugwell, P., Bommer, C., Ebert, C., Barreto, M., … Vollmer, S. (2017). Quasi-experimental study designs series-paper 7: Assessing the assumptions. Journal of Clinical Epidemiology, 89, 53–66. https://doi.org/10.1016/j.jclinepi.2017.02.017
Baernighausen, T., Rottingen, J.-A., Rockers, P., Shemilt, I., & Tugwell, P. (2017). Quasi-experimental study designs series-paper 1: Introduction: Two historical lineages. Journal of Clinical Epidemiology, 89, 4–11. https://doi.org/10.1016/j.jclinepi.2017.02.020
Baernighausen, T., Tugwell, P., Rottingen, J.-A., Shemilt, I., Rockers, P., Geldsetzer, P., … Atun, R. (2017). Quasi-experimental study designs series-paper 4: Uses and value. Journal of Clinical Epidemiology, 89, 21–29. https://doi.org/10.1016/j.jclinepi.2017.03.012

Baijnath, S., Moodley, C., Ngcobo, B., Singh, S. D., Kruger, H. G., Arvidsson, P. I., … Govender, T. (2017). Clofazimine protects against mycobacterium tuberculosis dissemination in the CNS following an aerosol challenge in a murine model. International Journal of Antimicrobial Agents. https://doi.org/10.1016/j.ijantimicag.2017.08.020

Baijnath, S., Moodley, C., Ngcobo, B., Singh, S. D., Kruger, H. G., Arvidsson, P. I., … Govender, T. (2017). Clofazimine protects against mycobacterium tuberculosis dissemination in the CNS following an aerosol challenge in a murine model. International Journal of Antimicrobial Agents. https://doi.org/10.1016/j.ijantimicag.2017.08.020

Bernays, S., Bukenya, D., Thompson, C., Ssembajja, F., & Seeley, J. (2017). Being an ‘adolescent’: The consequences of gendered risks for young people in rural Uganda. Childhood, 0907568217732119. https://doi.org/10.1177/0907568217732119

Bernays, S., Bukenya, D., Thompson, C., Ssembajja, F., & Seeley, J. (2017). Being an ‘adolescent’: The consequences of gendered risks for young people in rural Uganda. Childhood, 0907568217732119. https://doi.org/10.1177/0907568217732119

Bhattacharya, D., Danaviah, S., Muema, D. M., Akilimali, N. A., Moodley, P., Ndung’u, T., & Das, G. (2017). Cellular Architecture of Spinal Granulomas and the Immunological Response in Tuberculosis Patients Coinfected with HIV. Frontiers in Immunology, 8, 1120. https://doi.org/10.3389/fimmu.2017.01120

Bhattacharya, D., Danaviah, S., Muema, D. M., Akilimali, N. A., Moodley, P., Ndung’u, T., & Das, G. (2017). Cellular Architecture of Spinal Granulomas and the Immunological Response in Tuberculosis Patients Coinfected with HIV. Frontiers in Immunology, 8, 1120. https://doi.org/10.3389/fimmu.2017.01120

Bocquier, P., Ginsburg, C., Herbst, K., Sankoh, O., & Collinson, M. A. (2017). A training manual for event history data management using Health and Demographic Surveillance System data. BMC Research Notes, 10(1), 224–224. https://doi.org/10.1186/s13104-017-2541-9

Bohlius, J. (2017). Comparison of Kaposi sarcoma risk in HIV-positive adults across five continents: a multiregional multicohort study. Clinical Infectious Diseases. https://doi.org/10.1093/cid/cix480

Bohlius, J. (2017). Comparison of Kaposi sarcoma risk in HIV-positive adults across five continents: a multiregional multicohort study. Clinical Infectious Diseases. https://doi.org/10.1093/cid/cix480

Bor, J., Ahmed, S., Fox, M. P., Rosen, S., Meyer-Rath, G., Katz, I. T., … Bärnighausen, T. (2017). Effect of eliminating CD4-count thresholds on HIV treatment initiation in South Africa: An empirical modeling study. PLOS ONE, 12(6), e0178249. https://doi.org/10.1371/journal.pone.0178249

Bor, J., Ahmed, S., Fox, M. P., Rosen, S., Meyer-Rath, G., Katz, I. T., … Bärnighausen, T. (2017). Effect of eliminating CD4-count thresholds on HIV treatment initiation in South Africa: An empirical modeling study. PLOS ONE, 12(6), e0178249. https://doi.org/10.1371/journal.pone.0178249

Bor, J., Chiu, C., Ahmed, S., Katz, I., Fox, M., Rosen, S., … Bärnighausen, T. (2017). Failure to initiate HIV treatment in patients with high CD4 counts: evidence from demographic surveillance in rural KwaZulu-Natal. Tropical Medicine & International Health, n/a-n/a. https://doi.org/10.1111/tmi.13013

Bor, J., Chiu, C., Ahmed, S., Katz, I., Fox, M., Rosen, S., … Bärnighausen, T. (2017). Failure to initiate HIV treatment in patients with high CD4 counts: evidence from demographic surveillance in rural KwaZulu-Natal. Tropical Medicine & International Health, n/a-n/a. https://doi.org/10.1111/tmi.13013

Bor, J., Fox, M. P., Rosen, S., Venkataramani, A., Tanser, F., Pillay, D., & Bärnighausen, T. (2017). Treatment eligibility and retention in clinical HIV care: A regression discontinuity study in South Africa. PLOS Medicine, 14(11), e1002463. https://doi.org/10.1371/journal.pmed.1002463 

Bor, J., Fox, M. P., Rosen, S., Venkataramani, A., Tanser, F., Pillay, D., & Bärnighausen, T. (2017). Treatment eligibility and retention in clinical HIV care: A regression discontinuity study in South Africa. PLOS Medicine, 14(11), e1002463. https://doi.org/10.1371/journal.pmed.1002463 

Brennan, A. T., Davies, M.-A., Bor, J., Wandeler, G., Stinson, K., Wood, R., … Fox, M. P. (2017). Has the phasing out of stavudine in accordance with changes in WHO guidelines led to a decrease in single-drug substitutions in first-line antiretroviral therapy for HIV in sub-Saharan Africa? AIDS, 31(1). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2017/01020/Has_the_phasing_out_of_stavudine_in_accordance.16.aspx

Brennan, A. T., Davies, M.-A., Bor, J., Wandeler, G., Stinson, K., Wood, R., … Fox, M. P. (2017). Has the phasing out of stavudine in accordance with changes in WHO guidelines led to a decrease in single-drug substitutions in first-line antiretroviral therapy for HIV in sub-Saharan Africa? AIDS, 31(1). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2017/01020/Has_the_phasing_out_of_stavudine_in_accordance.16.aspx

Bärnighausen, T. (2017). Population health intervention research: three important advancements. International Journal of Public Health. https://doi.org/10.1007/s00038-017-0985-2

Bärnighausen, T. (2017). Population health intervention research: three important advancements. International Journal of Public Health. https://doi.org/10.1007/s00038-017-0985-2

Bukenya, D., Wringe, A., Moshabela, M., Skovdal, M., Ssekubugu, R., Paparini, S., … Seeley, J. (2017). Where are we now? A multicountry qualitative study to explore access to pre-antiretroviral care services: a precursor to antiretroviral therapy initiation. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052970

Bukenya, D., Wringe, A., Moshabela, M., Skovdal, M., Ssekubugu, R., Paparini, S., … Seeley, J. (2017). Where are we now? A multicountry qualitative study to explore access to pre-antiretroviral care services: a precursor to antiretroviral therapy initiation. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052970

Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., Kamungoma, N., … Oldenburg, C. E. (2017). HIV self-testing among female sex workers in Zambia: A cluster randomized controlled trial. PLOS Medicine, 14(11), e1002442. https://doi.org/10.1371/journal.pmed.1002442

Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., Kamungoma, N., … Oldenburg, C. E. (2017). Contraceptive use and unplanned pregnancy among female sex workers in Zambia. Contraception, 96(3), 196–202. https://doi.org/10.1016/j.contraception.2017.07.003

Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., Kamungoma, N., … Oldenburg, C. E. (2017). HIV self-testing among female sex workers in Zambia: A cluster randomized controlled trial. PLOS Medicine, 14(11), e1002442. https://doi.org/10.1371/journal.pmed.1002442

Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., Kamungoma, N., … Oldenburg, C. E. (2017). Contraceptive use and unplanned pregnancy among female sex workers in Zambia. Contraception, 96(3), 196–202. https://doi.org/10.1016/j.contraception.2017.07.003

Chang, C. C., Kangethe, R., Omarjee, S., Hiramen, K., Gosnell, B., Sojane, K., … Ndung’u, T. (2017). Relationship of Human Immunodeficiency Virus Viral Load in Cerebrospinal Fluid and Plasma in Patients Co-infected With Cryptococcal Meningitis. Open Forum Infectious Diseases, 4(2). https://doi.org/10.1093/ofid/ofx032

Chang, C. C., Kangethe, R., Omarjee, S., Hiramen, K., Gosnell, B., Sojane, K., … Ndung’u, T. (2017). Relationship of Human Immunodeficiency Virus Viral Load in Cerebrospinal Fluid and Plasma in Patients Co-infected With Cryptococcal Meningitis. Open Forum Infectious Diseases, 4(2). https://doi.org/10.1093/ofid/ofx032

Collier, D., Iwuji, C., Derache, A., de Oliveira, T., Okesola, N., Calmy, A., … Gupta, R. K. (2017). Virological Outcomes of Second-line Protease Inhibitor–Based Treatment for Human Immunodeficiency Virus Type 1 in a High-Prevalence Rural South African Setting: A Competing-Risks Prospective Cohort Analysis. Clinical Infectious Diseases, 64(8), 1006–1016. https://doi.org/10.1093/cid/cix015

Collier, D., Iwuji, C., Derache, A., de Oliveira, T., Okesola, N., Calmy, A., … Gupta, R. K. (2017). Virological Outcomes of Second-line Protease Inhibitor–Based Treatment for Human Immunodeficiency Virus Type 1 in a High-Prevalence Rural South African Setting: A Competing-Risks Prospective Cohort Analysis. Clinical Infectious Diseases, 64(8), 1006–1016. https://doi.org/10.1093/cid/cix015

Cordes, J. L., Stangl, A., Krishnaratne, S., Hoddinott, G., Mathema, H., Bond, V., … Hargreaves, J. R. (2017). Trends in Responses to DHS Questions Should Not Be Interpreted as Reflecting an Increase in “Anticipated Stigma” in Africa: JAIDS Journal of Acquired Immune Deficiency Syndromes, 75(1), e22–e23. https://doi.org/10.1097/QAI.0000000000001328

Cordes, J. L., Stangl, A., Krishnaratne, S., Hoddinott, G., Mathema, H., Bond, V., … Hargreaves, J. R. (2017). Trends in Responses to DHS Questions Should Not Be Interpreted as Reflecting an Increase in “Anticipated Stigma” in Africa: JAIDS Journal of Acquired Immune Deficiency Syndromes, 75(1), e22–e23. https://doi.org/10.1097/QAI.0000000000001328

Cornell, M., Johnson, L. F., Wood, R., Tanser, F., Fox, M. P., Prozesky, H., … Boulle, A. (2017). Twelve-year mortality in adults initiating antiretroviral therapy in South Africa. Journal of the International AIDS Society, 20(1). https://doi.org/10.7448/IAS.20.1.21902

Cornell, M., Johnson, L. F., Wood, R., Tanser, F., Fox, M. P., Prozesky, H., … Boulle, A. (2017). Twelve-year mortality in adults initiating antiretroviral therapy in South Africa. Journal of the International AIDS Society, 20(1). https://doi.org/10.7448/IAS.20.1.21902

Cox, H., Dickson-Hall, L., Ndjeka, N., van’t Hoog, A., Grant, A., Cobelens, F., … Nicol, M. (2017). Delays and loss to follow-up before treatment of drug-resistant tuberculosis following implementation of Xpert MTB/RIF in South Africa: A retrospective cohort study. PLOS Medicine, 14(2), e1002238. https://doi.org/10.1371/journal.pmed.1002238

Cox, H., Dickson-Hall, L., Ndjeka, N., van’t Hoog, A., Grant, A., Cobelens, F., … Nicol, M. (2017). Delays and loss to follow-up before treatment of drug-resistant tuberculosis following implementation of Xpert MTB/RIF in South Africa: A retrospective cohort study. PLOS Medicine, 14(2), e1002238. https://doi.org/10.1371/journal.pmed.1002238

Cuadros, D. F., Li, J., Branscum, A. J., Akullian, A., Jia, P., Mziray, E. N., & Tanser, F. (2017). Mapping the spatial variability of HIV infection in Sub-Saharan Africa: Effective information for localized HIV prevention and control. Scientific Reports, 7(1), 9093. https://doi.org/10.1038/s41598-017-09464-y

Cuadros, D. F., Li, J., Branscum, A. J., Akullian, A., Jia, P., Mziray, E. N., & Tanser, F. (2017). Mapping the spatial variability of HIV infection in Sub-Saharan Africa: Effective information for localized HIV prevention and control. Scientific Reports, 7(1), 9093. https://doi.org/10.1038/s41598-017-09464-y

Cumming, B. M., Chinta, K. C., Reddy, V. P., & Steyn, A. J. C. (2017). Role of Ergothioneine in Microbial Physiology and Pathogenesis. Antioxidants & Redox Signaling. https://doi.org/10.1089/ars.2017.7300

Cumming, B. M., Chinta, K. C., Reddy, V. P., & Steyn, A. J. C. (2017). Role of Ergothioneine in Microbial Physiology and Pathogenesis. Antioxidants & Redox Signaling. https://doi.org/10.1089/ars.2017.7300

Cumming, B. M., Rahman, M. A., Lamprecht, D. A., Rohde, K. H., Saini, V., Adamson, J. H., … Steyn, A. J. C. (2017). Mycobacterium tuberculosis arrests host cycle at the G1/S transition to establish long term infection. PLOS Pathogens, 13(5), e1006389. https://doi.org/10.1371/journal.ppat.1006389

Cumming, B. M., Rahman, M. A., Lamprecht, D. A., Rohde, K. H., Saini, V., Adamson, J. H., … Steyn, A. J. C. (2017). Mycobacterium tuberculosis arrests host cycle at the G1/S transition to establish long term infection. PLOS Pathogens, 13(5), e1006389. https://doi.org/10.1371/journal.ppat.1006389

De Neve, J.-W., & Harling, G. (2017). Offspring schooling associated with increased parental survival in rural KwaZulu-Natal, South Africa. Social Science & Medicine, 176, 149–157. https://doi.org/10.1016/j.socscimed.2017.01.015

De Neve, J.-W., & Harling, G. (2017). Offspring schooling associated with increased parental survival in rural KwaZulu-Natal, South Africa. Social Science & Medicine, 176, 149–157. https://doi.org/10.1016/j.socscimed.2017.01.015

de Welzen, L., Eldholm, V., Maharaj, K., Manson, A. L., Earl, A. M., & Pym, A. S. (2017). Whole transcriptome and genomic analysis of extensively drug-resistant Mycobacterium tuberculosis clinical isolates identifies downregulation of ethA as a mechanism of ethionamide resistance. Antimicrobial Agents and Chemotherapyhttps://doi.org/10.1128/AAC.01461-17

de Welzen, L., Eldholm, V., Maharaj, K., Manson, A. L., Earl, A. M., & Pym, A. S. (2017). Whole transcriptome and genomic analysis of extensively drug-resistant Mycobacterium tuberculosis clinical isolates identifies downregulation of ethA as a mechanism of ethionamide resistance. Antimicrobial Agents and Chemotherapyhttps://doi.org/10.1128/AAC.01461-17

Dobra, A., Bärnighausen, T., Vandormael, A., & Tanser, F. (2017). Space-time migration patterns and risk of HIV acquisition in rural South Africa. AIDS (London, England), 31(1), 137–145. https://doi.org/10.1097/QAD.0000000000001292

Dobra, A., Bärnighausen, T., Vandormael, A., & Tanser, F. (2017). Space-time migration patterns and risk of HIV acquisition in rural South Africa. AIDS (London, England), 31(1), 137–145. https://doi.org/10.1097/QAD.0000000000001292

Dong, K. L., Moodley, A., Kwon, D. S., Ghebremichael, M. S., Dong, M., Ismail, N., … Ndung’u, T. (n.d.). Detection and treatment of Fiebig stage I HIV-1 infection in young at-risk women in South Africa: a prospective cohort study. The Lancet HIVhttps://doi.org/10.1016/S2352-3018(17)30146-7

Dong, K. L., Moodley, A., Kwon, D. S., Ghebremichael, M. S., Dong, M., Ismail, N., … Ndung’u, T. (n.d.). Detection and treatment of Fiebig stage I HIV-1 infection in young at-risk women in South Africa: a prospective cohort study. The Lancet HIVhttps://doi.org/10.1016/S2352-3018(17)30146-7

Dowdy, D. W., Grant, A. D., Dheda, K., Nardell, E., Fielding, K., & Moore, D. A. J. (2017). Designing and Evaluating Interventions to Halt the Transmission of Tuberculosis. The Journal of Infectious Diseases216(suppl_6), S654–S661. https://doi.org/10.1093/infdis/jix320 

Dowdy, D. W., Grant, A. D., Dheda, K., Nardell, E., Fielding, K., & Moore, D. A. J. (2017). Designing and Evaluating Interventions to Halt the Transmission of Tuberculosis. The Journal of Infectious Diseases216(suppl_6), S654–S661. https://doi.org/10.1093/infdis/jix320 

Gatuguta, A., Katusiime, B., Seeley, J., Colombini, M., Mwanzo, I., & Devries, K. (2017). Should community health workers offer support healthcare services to survivors of sexual violence? a systematic review. BMC International Health and Human Rights, 17(1), 28. https://doi.org/10.1186/s12914-017-0137-z

Gatuguta, A., Katusiime, B., Seeley, J., Colombini, M., Mwanzo, I., & Devries, K. (2017). Should community health workers offer support healthcare services to survivors of sexual violence? a systematic review. BMC International Health and Human Rights, 17(1), 28. https://doi.org/10.1186/s12914-017-0137-z

Geldsetzer, P., De Neve, J.-W., Boudreaux, C., Bärnighausen, T., & Bossert, T. J. (2017). Improving the performance of community health workers in Swaziland: findings from a qualitative study. Human Resources for Health, 15(1), 68. https://doi.org/10.1186/s12960-017-0236-x

Geldsetzer, P., De Neve, J.-W., Boudreaux, C., Bärnighausen, T., & Bossert, T. J. (2017). Improving the performance of community health workers in Swaziland: findings from a qualitative study. Human Resources for Health, 15(1), 68. https://doi.org/10.1186/s12960-017-0236-x

Geldsetzer, P., Feigl, A. B., Tanser, F., Gareta, D., Pillay, D., & Bärnighausen, T. (2017). Population-level decline in BMI and systolic blood pressure following mass HIV treatment: Evidence from rural KwaZulu-Natal: Decline in BMI and BP following Mass HIV Treatment. Obesity, 25(1), 200–206. https://doi.org/10.1002/oby.21663

Geldsetzer, P., Feigl, A. B., Tanser, F., Gareta, D., Pillay, D., & Bärnighausen, T. (2017). Population-level decline in BMI and systolic blood pressure following mass HIV treatment: Evidence from rural KwaZulu-Natal: Decline in BMI and BP following Mass HIV Treatment. Obesity, 25(1), 200–206. https://doi.org/10.1002/oby.21663

Godfrey, C., Thigpen, M. C., Crawford, K. W., Jean-Phillippe, P., Pillay, D., Persaud, D., … Fitzgibbon, J. (2017). Global HIV Antiretroviral Drug Resistance. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jix137

Godfrey, C., Thigpen, M. C., Crawford, K. W., Jean-Phillippe, P., Pillay, D., Persaud, D., … Fitzgibbon, J. (2017). Global HIV Antiretroviral Drug Resistance. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jix137

Goodall, R. L., Dunn, D. T., Nkurunziza, P., Mugarura, L., Pattery, T., Munderi, P., … Gupta, R. K. (2017). Rapid accumulation of HIV-1 thymidine analogue mutations and phenotypic impact following prolonged viral failure on zidovudine-based first-line ART in sub-Saharan Africa. Journal of Antimicrobial Chemotherapy, 72(5), 1450–1455. https://doi.org/10.1093/jac/dkw583

Goodall, R. L., Dunn, D. T., Nkurunziza, P., Mugarura, L., Pattery, T., Munderi, P., … Gupta, R. K. (2017). Rapid accumulation of HIV-1 thymidine analogue mutations and phenotypic impact following prolonged viral failure on zidovudine-based first-line ART in sub-Saharan Africa. Journal of Antimicrobial Chemotherapy, 72(5), 1450–1455. https://doi.org/10.1093/jac/dkw583

Gupta, R. K., Gregson, J., Parkin, N., Haile-Selassie, H., Tanuri, A., Andrade Forero, L., … Bertagnolio, S. (2017). HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression analysis. The Lancet Infectious Diseases. https://doi.org/10.1016/S1473-3099(17)30702-8 

Gupta, R. K., Gregson, J., Parkin, N., Haile-Selassie, H., Tanuri, A., Andrade Forero, L., … Bertagnolio, S. (2017). HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression analysis. The Lancet Infectious Diseases. https://doi.org/10.1016/S1473-3099(17)30702-8 

Haber, N., Tanser, F., Bor, J., Naidu, K., Mutevedzi, T., Herbst, K., … Bärnighausen, T. (2017). From HIV infection to therapeutic response: a population-based longitudinal HIV cascade-of-care study in KwaZulu-Natal, South Africa. The Lancet HIV, 4(5), e223–e230. https://doi.org/10.1016/S2352-3018(16)30224-7

Haber, N., Tanser, F., Bor, J., Naidu, K., Mutevedzi, T., Herbst, K., … Bärnighausen, T. (2017). From HIV infection to therapeutic response: a population-based longitudinal HIV cascade-of-care study in KwaZulu-Natal, South Africa. The Lancet HIV, 4(5), e223–e230. https://doi.org/10.1016/S2352-3018(16)30224-7

Hainsworth, E. G., Shahmanesh, M., & Stevenson, F. (2017). Exploring the views and experiences of HIV positive patients treated for cancer: a systematic review of the literature. AIDS Care, 1–9. https://doi.org/10.1080/09540121.2017.1381332

Hainsworth, E. G., Shahmanesh, M., & Stevenson, F. (2017). Exploring the views and experiences of HIV positive patients treated for cancer: a systematic review of the literature. AIDS Care, 1–9. https://doi.org/10.1080/09540121.2017.1381332

Hanifa, Y., Fielding, K. L., Chihota, V. N., Adonis, L., Charalambous, S., Foster, N., … Grant, A. D. (2017). A clinical scoring system to prioritise investigation for tuberculosis among adults attending HIV clinics in South Africa. PLOS ONE, 12(8), e0181519. https://doi.org/10.1371/journal.pone.0181519

Hanifa, Y., Fielding, K. L., Chihota, V. N., Adonis, L., Charalambous, S., Foster, N., … Grant, A. D. (2017). A clinical scoring system to prioritise investigation for tuberculosis among adults attending HIV clinics in South Africa. PLOS ONE, 12(8), e0181519. https://doi.org/10.1371/journal.pone.0181519

Harling, G., Gumede, D., Mutevedzi, T., McGrath, N., Seeley, J., Pillay, D., … Herbst, A. J. (2017). The impact of self-interviews on response patterns for sensitive topics: a randomized trial of electronic delivery methods for a sexual behaviour questionnaire in rural South Africa. BMC Medical Research Methodology, 17(1), 125. https://doi.org/10.1186/s12874-017-0403-8

Harling, G., Gumede, D., Mutevedzi, T., McGrath, N., Seeley, J., Pillay, D., … Herbst, A. J. (2017). The impact of self-interviews on response patterns for sensitive topics: a randomized trial of electronic delivery methods for a sexual behaviour questionnaire in rural South Africa. BMC Medical Research Methodology, 17(1), 125. https://doi.org/10.1186/s12874-017-0403-8

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Paredes, R., Tzou, P. L., van Zyl, G., Barrow, G., Camacho, R., Carmona, S., … Shafer, R. W. (2017). Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation. PLOS ONE, 12(7), e0181357. https://doi.org/10.1371/journal.pone.0181357

Paredes, R., Tzou, P. L., van Zyl, G., Barrow, G., Camacho, R., Carmona, S., … Shafer, R. W. (2017). Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation. PLOS ONE, 12(7), e0181357. https://doi.org/10.1371/journal.pone.0181357

Patenaude, B. N., Chimbindi, N., Pillay, D., & Bärnighausen, T. (2017). The impact of ART initiation on household food security over time. Social Science & Medicine. https://doi.org/10.1016/j.socscimed.2017.11.036

Patenaude, B. N., Chimbindi, N., Pillay, D., & Bärnighausen, T. (2017). The impact of ART initiation on household food security over time. Social Science & Medicine. https://doi.org/10.1016/j.socscimed.2017.11.036

Phillips, A. N., Cambiano, V., Nakagawa, F., Revill, P., Jordan, M. R., Hallett, T. B., … Bertagnolio, S. (2017). Cost-effectiveness of public-health policy options in the presence of pretreatment NNRTI drug resistance in sub-Saharan Africa: a modelling study. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30190-X

 

Phillips, A. N., Cambiano, V., Nakagawa, F., Revill, P., Jordan, M. R., Hallett, T. B., … Bertagnolio, S. (2017). Cost-effectiveness of public-health policy options in the presence of pretreatment NNRTI drug resistance in sub-Saharan Africa: a modelling study. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30190-X

 

Phillips, A. N., Stover, J., Cambiano, V., Nakagawa, F., Jordan, M. R., Pillay, D., … Bertagnolio, S. (2017). Impact of HIV Drug Resistance on HIV/AIDS-Associated Mortality, New Infections, and Antiretroviral Therapy Program Costs in Sub–Saharan Africa. The Journal of Infectious Diseases, 215(9), 1362–1365. https://doi.org/10.1093/infdis/jix089

Phillips, A. N., Stover, J., Cambiano, V., Nakagawa, F., Jordan, M. R., Pillay, D., … Bertagnolio, S. (2017). Impact of HIV Drug Resistance on HIV/AIDS-Associated Mortality, New Infections, and Antiretroviral Therapy Program Costs in Sub–Saharan Africa. The Journal of Infectious Diseases, 215(9), 1362–1365. https://doi.org/10.1093/infdis/jix089

Plazy, M., Perriat, D., Gumede, D., Boyer, S., Pillay, D., Dabis, F., Seeley, J., Orne-Gliemann, J. (2017). Implementing universal HIV treatment in a high HIV prevalence and rural South African setting – Field experiences and recommendations of health care providers. PLOS ONE12(11), e0186883. https://doi.org/10.1371/journal.pone.0186883

Plazy, M., Perriat, D., Gumede, D., Boyer, S., Pillay, D., Dabis, F., Seeley, J., Orne-Gliemann, J. (2017). Implementing universal HIV treatment in a high HIV prevalence and rural South African setting – Field experiences and recommendations of health care providers. PLOS ONE12(11), e0186883. https://doi.org/10.1371/journal.pone.0186883

Power, R. A., Tansey, K. E., Buttenschøn, H. N., Cohen-Woods, S., Bigdeli, T., Hall, L. S., … Lewis, C. M. (2017). Genome-wide Association for Major Depression Through Age at Onset Stratification: Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium. Biological Psychiatry, 81(4), 325–335. https://doi.org/10.1016/j.biopsych.2016.05.010

Power, R. A., Tansey, K. E., Buttenschøn, H. N., Cohen-Woods, S., Bigdeli, T., Hall, L. S., … Lewis, C. M. (2017). Genome-wide Association for Major Depression Through Age at Onset Stratification: Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium. Biological Psychiatry, 81(4), 325–335. https://doi.org/10.1016/j.biopsych.2016.05.010

Price, H., Dunn, D., Zachary, T., Vudriko, T., Chirara, M., Kityo, C., … Gilson, R. (2017). Hepatitis B serological markers and plasma DNA concentrations: baseline results from a treatment-monitoring practices trial. AIDS, 31(8), 1109–1117. https://doi.org/10.1097/QAD.0000000000001454

Price, H., Dunn, D., Zachary, T., Vudriko, T., Chirara, M., Kityo, C., … Gilson, R. (2017). Hepatitis B serological markers and plasma DNA concentrations: baseline results from a treatment-monitoring practices trial. AIDS, 31(8), 1109–1117. https://doi.org/10.1097/QAD.0000000000001454

Ratmann, O., Wymant, C., Colijn, C., Danaviah, S., Essex, M., Frost, S., … on behalf of the PANGEA-HIV Consort. (2017). HIV-1 Full-Genome Phylogenetics of Generalized Epidemics in Sub-Saharan Africa: Impact of Missing Nucleotide Characters in Next-Generation Sequences. AIDS Research and Human Retroviruses. https://doi.org/10.1089/aid.2017.0061

Ratmann, O., Wymant, C., Colijn, C., Danaviah, S., Essex, M., Frost, S., … on behalf of the PANGEA-HIV Consort. (2017). HIV-1 Full-Genome Phylogenetics of Generalized Epidemics in Sub-Saharan Africa: Impact of Missing Nucleotide Characters in Next-Generation Sequences. AIDS Research and Human Retroviruses. https://doi.org/10.1089/aid.2017.0061

Reimers, P., Israel-Ballard, K., Craig, M., Spies, L., Thior, I., Tanser, F., & Coutsoudis, A. (2017). A Cluster Randomised Trial to Determine the Efficacy of the “Feeding Buddies” Programme in Improving Exclusive Breastfeeding Rates Among HIV-Infected Women in Rural KwaZulu-Natal, South Africa. AIDS and Behavior. https://doi.org/10.1007/s10461-017-1865-8

Reimers, P., Israel-Ballard, K., Craig, M., Spies, L., Thior, I., Tanser, F., & Coutsoudis, A. (2017). A Cluster Randomised Trial to Determine the Efficacy of the “Feeding Buddies” Programme in Improving Exclusive Breastfeeding Rates Among HIV-Infected Women in Rural KwaZulu-Natal, South Africa. AIDS and Behavior. https://doi.org/10.1007/s10461-017-1865-8

Reniers, G., Blom, S., Lieber, J., Herbst, A. J., Calvert, C., Bor, J., … Hosegood, V. (2017). Tuberculosis mortality and the male survival deficit in rural South Africa: An observational community cohort study. PLOS ONE, 12(10), e0185692. https://doi.org/10.1371/journal.pone.0185692

Reniers, G., Blom, S., Lieber, J., Herbst, A. J., Calvert, C., Bor, J., … Hosegood, V. (2017). Tuberculosis mortality and the male survival deficit in rural South Africa: An observational community cohort study. PLOS ONE, 12(10), e0185692. https://doi.org/10.1371/journal.pone.0185692

Rhee, S.-Y., Varghese, V., Holmes, S. P., Van Zyl, G. U., Steegen, K., Boyd, M. A., … Shafer, R. W. (2017). Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. EBioMedicine, 18(Supplement C), 225–235. https://doi.org/10.1016/j.ebiom.2017.03.024

Rhee, S.-Y., Varghese, V., Holmes, S. P., Van Zyl, G. U., Steegen, K., Boyd, M. A., … Shafer, R. W. (2017). Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. EBioMedicine, 18(Supplement C), 225–235. https://doi.org/10.1016/j.ebiom.2017.03.024

Rochat, T. J., Houle, B., Stein, A., Pearson, R. M., Newell, M. L., & Bland, R. M. (2017). Cohort Profile: The Siyakhula Cohort, rural South Africa. International Journal of Epidemiology, dyx148-dyx148. https://doi.org/10.1093/ije/dyx148

Rochat, T. J., Houle, B., Stein, A., Pearson, R. M., Newell, M. L., & Bland, R. M. (2017). Cohort Profile: The Siyakhula Cohort, rural South Africa. International Journal of Epidemiology, dyx148-dyx148. https://doi.org/10.1093/ije/dyx148

Rochat, T. J., Stein, A., Cortina-Borja, M., Tanser, F., & Bland, R. M. (2017). The Amagugu intervention for disclosure of maternal HIV to uninfected primary school-aged children in South Africa: a randomised controlled trial. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30133-9

Rochat, T. J., Stein, A., Cortina-Borja, M., Tanser, F., & Bland, R. M. (2017). The Amagugu intervention for disclosure of maternal HIV to uninfected primary school-aged children in South Africa: a randomised controlled trial. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30133-9

Rohr, J. K., Xavier Gómez-Olivé, F., Rosenberg, M., Manne-Goehler, J., Geldsetzer, P., Wagner, R. G., … Bärnighausen, T. (2017). Performance of self-reported HIV status in determining true HIV status among older adults in rural South Africa: a validation study. Journal of the International AIDS Society, 20(1). https://doi.org/10.7448/IAS.20.1.21691

Rohr, J. K., Xavier Gómez-Olivé, F., Rosenberg, M., Manne-Goehler, J., Geldsetzer, P., Wagner, R. G., … Bärnighausen, T. (2017). Performance of self-reported HIV status in determining true HIV status among older adults in rural South Africa: a validation study. Journal of the International AIDS Society, 20(1). https://doi.org/10.7448/IAS.20.1.21691

Rosenberg, M. S., Gómez-Olivé, F. X., Rohr, J. K., Houle, B. C., Kabudula, C. W., Wagner, R. G., … Bärnighausen, T. (2017). Sexual Behaviors and HIV Status: A Population-Based Study Among Older Adults in Rural South Africa. JAIDS Journal of Acquired Immune Deficiency Syndromes, 74(1), e9–e17. https://doi.org/10.1097/QAI.0000000000001173

Rosenberg, M. S., Gómez-Olivé, F. X., Rohr, J. K., Houle, B. C., Kabudula, C. W., Wagner, R. G., … Bärnighausen, T. (2017). Sexual Behaviors and HIV Status: A Population-Based Study Among Older Adults in Rural South Africa. JAIDS Journal of Acquired Immune Deficiency Syndromes, 74(1), e9–e17. https://doi.org/10.1097/QAI.0000000000001173

Rossouw, T., Nieuwoudt, M., Manasa, J., Malherbe, G., Lessells, R., Pillay, S., … de Oliveira, T. (2017). HIV drug resistance levels in adults failing first-line antiretroviral therapy in an urban and a rural setting in South Africa. HIV Medicine, 18(2), 104–114. https://doi.org/10.1111/hiv.12400

Rossouw, T., Nieuwoudt, M., Manasa, J., Malherbe, G., Lessells, R., Pillay, S., … de Oliveira, T. (2017). HIV drug resistance levels in adults failing first-line antiretroviral therapy in an urban and a rural setting in South Africa. HIV Medicine, 18(2), 104–114. https://doi.org/10.1111/hiv.12400

Sanya, R. E., Tumwesige, E., Elliott, A. M., & Seeley, J. (2017). Perceptions about interventions to control schistosomiasis among the Lake Victoria island communities of Koome, Uganda. PLOS Neglected Tropical Diseases, 11(10), e0005982. https://doi.org/10.1371/journal.pntd.0005982

Sanya, R. E., Tumwesige, E., Elliott, A. M., & Seeley, J. (2017). Perceptions about interventions to control schistosomiasis among the Lake Victoria island communities of Koome, Uganda. PLOS Neglected Tropical Diseases, 11(10), e0005982. https://doi.org/10.1371/journal.pntd.0005982

Schomaker, M., Leroy, V., Wolfs, T., Technau, K.-G., Renner, L., Judd, A., … Davies, M.-A. (2017). Optimal timing of antiretroviral treatment initiation in HIV-positive children and adolescents: a multiregional analysis from Southern Africa, West Africa and Europe. International Journal of Epidemiology, 46(2), 453–465. https://doi.org/10.1093/ije/dyw097

Schomaker, M., Leroy, V., Wolfs, T., Technau, K.-G., Renner, L., Judd, A., … Davies, M.-A. (2017). Optimal timing of antiretroviral treatment initiation in HIV-positive children and adolescents: a multiregional analysis from Southern Africa, West Africa and Europe. International Journal of Epidemiology, 46(2), 453–465. https://doi.org/10.1093/ije/dyw097

Schultze, A., Paredes, R., Sabin, C., Phillips, A. N., Pillay, D., Mackie, N., … Cozzi-Lepri, A. (2017). The association between detected drug resistance mutations and CD4+ T-cell decline in HIV-positive individuals maintained on a failing treatment regimen. Antiviral Therapy. https://doi.org/10.3851/IMP3178

Schultze, A., Paredes, R., Sabin, C., Phillips, A. N., Pillay, D., Mackie, N., … Cozzi-Lepri, A. (2017). The association between detected drug resistance mutations and CD4+ T-cell decline in HIV-positive individuals maintained on a failing treatment regimen. Antiviral Therapy. https://doi.org/10.3851/IMP3178

Seeley, J. (2017). HIV diagnosis increasing in older adults in Europe. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30151-0

Seeley, J. (2017). HIV diagnosis increasing in older adults in Europe. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30151-0

Shrestha, S., Chihota, V., White, R. G., Grant, A. D., Churchyard, G. J., & Dowdy, D. W. (2017). Impact of Targeted Tuberculosis Vaccination Among a Mining Population in South Africa: A Model-Based Study. American Journal of Epidemiology, 186(12), 1362–1369. https://doi.org/10.1093/aje/kwx192

Shrestha, S., Chihota, V., White, R. G., Grant, A. D., Churchyard, G. J., & Dowdy, D. W. (2017). Impact of Targeted Tuberculosis Vaccination Among a Mining Population in South Africa: A Model-Based Study. American Journal of Epidemiology, 186(12), 1362–1369. https://doi.org/10.1093/aje/kwx192

Siu, G. E., Wight, D., Seeley, J., Namutebi, C., Sekiwunga, R., Zalwango, F., & Kasule, S. (2017). Men’s Involvement in a Parenting Programme to Reduce Child Maltreatment and Gender-Based Violence: Formative Evaluation in Uganda. The European Journal of Development Research. https://doi.org/10.1057/s41287-017-0103-6

Siu, G. E., Wight, D., Seeley, J., Namutebi, C., Sekiwunga, R., Zalwango, F., & Kasule, S. (2017). Men’s Involvement in a Parenting Programme to Reduce Child Maltreatment and Gender-Based Violence: Formative Evaluation in Uganda. The European Journal of Development Research. https://doi.org/10.1057/s41287-017-0103-6

Skovdal, M., Wringe, A., Seeley, J., Renju, J., Paparini, S., Wamoyi, J., … Bonnington, O. (2017). Using theories of practice to understand HIV-positive persons varied engagement with HIV services: a qualitative study in six Sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052977

Skovdal, M., Wringe, A., Seeley, J., Renju, J., Paparini, S., Wamoyi, J., … Bonnington, O. (2017). Using theories of practice to understand HIV-positive persons varied engagement with HIV services: a qualitative study in six Sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052977

Ssali, A., Nunn, A., Mbonye, M., Anywaine, Z., & Seeley, J. (2017). Reasons for participating in a randomised clinical trial: The volunteers’ voices in the COSTOP trial in Uganda. Contemporary Clinical Trials Communications, 7(Supplement C), 44–47. https://doi.org/10.1016/j.conctc.2017.05.007

Ssali, A., Nunn, A., Mbonye, M., Anywaine, Z., & Seeley, J. (2017). Reasons for participating in a randomised clinical trial: The volunteers’ voices in the COSTOP trial in Uganda. Contemporary Clinical Trials Communications, 7(Supplement C), 44–47. https://doi.org/10.1016/j.conctc.2017.05.007

Suthar, A. B., & Bärnighausen, T. (2017). Antiretroviral therapy and population mortality: Leveraging routine national data to advance policy. PLOS Medicine, 14(12), e1002469. https://doi.org/10.1371/journal.pmed.1002469

Suthar, A. B., & Bärnighausen, T. (2017). Antiretroviral therapy and population mortality: Leveraging routine national data to advance policy. PLOS Medicine, 14(12), e1002469. https://doi.org/10.1371/journal.pmed.1002469

Suthar, A. B., Nagata, J. M., Nsanzimana, S., Bärnighausen, T., Negussie, E. K., & Doherty, M. C. (2017). Performance-based financing for improving HIV/AIDS service delivery: a systematic review. BMC Health Services Research, 17(1), 6. https://doi.org/10.1186/s12913-016-1962-9

Suthar, A. B., Nagata, J. M., Nsanzimana, S., Bärnighausen, T., Negussie, E. K., & Doherty, M. C. (2017). Performance-based financing for improving HIV/AIDS service delivery: a systematic review. BMC Health Services Research, 17(1), 6. https://doi.org/10.1186/s12913-016-1962-9

Tanser, F., Bärnighausen, T., Dobra, A., & Sartorius, B. (2017). Identifying ‘corridors of HIV transmission’ in a severely affected rural South African population: a case for a shift toward targeted prevention strategies. International Journal of Epidemiology. https://doi.org/10.1093/ije/dyx257 

Tanser, F., Bärnighausen, T., Dobra, A., & Sartorius, B. (2017). Identifying ‘corridors of HIV transmission’ in a severely affected rural South African population: a case for a shift toward targeted prevention strategies. International Journal of Epidemiology. https://doi.org/10.1093/ije/dyx257 

Tanser, F., Vandormael, A., Cuadros, D., Phillips, A. N., de Oliveira, T., Tomita, A., … Pillay, D. (2017). Effect of population viral load on prospective HIV incidence in a hyperendemic rural African community. Science Translational Medicine, 9(420), eaam8012. https://doi.org/10.1126/scitranslmed.aam8012 

Tanser, F., Vandormael, A., Cuadros, D., Phillips, A. N., de Oliveira, T., Tomita, A., … Pillay, D. (2017). Effect of population viral load on prospective HIV incidence in a hyperendemic rural African community. Science Translational Medicine, 9(420), eaam8012. https://doi.org/10.1126/scitranslmed.aam8012 

Thayyil, S., Oliveira, V., Lally, P. J., Swamy, R., Bassett, P., Chandrasekaran, M., … Shankaran, S. (2017). Hypothermia for encephalopathy in low and middle-income countries (HELIX): study protocol for a randomised controlled trial. Trials, 18(1), 432. https://doi.org/10.1186/s13063-017-2165-3

Thayyil, S., Oliveira, V., Lally, P. J., Swamy, R., Bassett, P., Chandrasekaran, M., … Shankaran, S. (2017). Hypothermia for encephalopathy in low and middle-income countries (HELIX): study protocol for a randomised controlled trial. Trials, 18(1), 432. https://doi.org/10.1186/s13063-017-2165-3

Thobakgale, C., Naidoo, K., McKinnon, L. R., Werner, L., Samsunder, N., Karim, S. A., … Naidoo, K. (2017). Interleukin 1-Beta (IL-1β) Production by Innate Cells Following TLR Stimulation Correlates With TB Recurrence in ART-Treated HIV-Infected Patients. JAIDS Journal of Acquired Immune Deficiency Syndromes, 74(2). Retrieved from http://journals.lww.com/jaids/Fulltext/2017/02010/Interleukin_1_Beta__IL_1___Production_by_Innate.16.aspx

Thobakgale, C., Naidoo, K., McKinnon, L. R., Werner, L., Samsunder, N., Karim, S. A., … Naidoo, K. (2017). Interleukin 1-Beta (IL-1β) Production by Innate Cells Following TLR Stimulation Correlates With TB Recurrence in ART-Treated HIV-Infected Patients. JAIDS Journal of Acquired Immune Deficiency Syndromes, 74(2). Retrieved from http://journals.lww.com/jaids/Fulltext/2017/02010/Interleukin_1_Beta__IL_1___Production_by_Innate.16.aspx

Titanji, B. K., Pillay, D., & Jolly, C. (2017). Combination antiretroviral therapy and cell–cell spread of wild-type and drug-resistant human immunodeficiency virus-1. Journal of General Virology, 98(4), 821–834. https://doi.org/10.1099/jgv.0.000728

Titanji, B. K., Pillay, D., & Jolly, C. (2017). Combination antiretroviral therapy and cell–cell spread of wild-type and drug-resistant human immunodeficiency virus-1. Journal of General Virology, 98(4), 821–834. https://doi.org/10.1099/jgv.0.000728

Tlou, B., Sartorius, B., & Tanser, F. (2017). Space-time patterns in maternal and mother mortality in a rural South African population with high HIV prevalence (2000–2014): results from a population-based cohort. BMC Public Health, 17(1). https://doi.org/10.1186/s12889-017-4463-9

Tlou, B., Sartorius, B., & Tanser, F. (2017). Space-time patterns in maternal and mother mortality in a rural South African population with high HIV prevalence (2000–2014): results from a population-based cohort. BMC Public Health, 17(1). https://doi.org/10.1186/s12889-017-4463-9

Tlou, B., Sartorius, B., & Tanser, F. (2017). Space-time variations in child mortality in a rural South African population with high HIV prevalence (2000–2014). PLOS ONE, 12(8), e0182478. https://doi.org/10.1371/journal.pone.0182478

Tlou, B., Sartorius, B., & Tanser, F. (2017). Space-time variations in child mortality in a rural South African population with high HIV prevalence (2000–2014). PLOS ONE, 12(8), e0182478. https://doi.org/10.1371/journal.pone.0182478

Tomita, A., Vandormael, A. M., Bärnighausen, T., de Oliveira, T., & Tanser, F. (2017). Social Disequilibrium and the Risk of HIV Acquisition: A Multilevel Study in Rural KwaZulu-Natal Province, South Africa. JAIDS Journal of Acquired Immune Deficiency Syndromes, 75(2), 164–174. https://doi.org/10.1097/QAI.0000000000001349

 

Tomita, A., Vandormael, A. M., Bärnighausen, T., de Oliveira, T., & Tanser, F. (2017). Social Disequilibrium and the Risk of HIV Acquisition: A Multilevel Study in Rural KwaZulu-Natal Province, South Africa. JAIDS Journal of Acquired Immune Deficiency Syndromes, 75(2), 164–174. https://doi.org/10.1097/QAI.0000000000001349

 

Tomita, A., Vandormael, A. M., Cuadros, D., Di Minin, E., Heikinheimo, V., Tanser, F., … Burns, J. K. (2017). Green environment and incident depression in South Africa: a geospatial analysis and mental health implications in a resource-limited setting. The Lancet Planetary Health, 1(4), e152–e162. https://doi.org/10.1016/S2542-5196(17)30063-3

Tomita, A., Vandormael, A. M., Cuadros, D., Di Minin, E., Heikinheimo, V., Tanser, F., … Burns, J. K. (2017). Green environment and incident depression in South Africa: a geospatial analysis and mental health implications in a resource-limited setting. The Lancet Planetary Health, 1(4), e152–e162. https://doi.org/10.1016/S2542-5196(17)30063-3

Tostevin, A., White, E., Dunn, D., Croxford, S., Delpech, V., Williams, I., … Bradley?Stewart, A. (2017). Recent trends and patterns in HIV?1 transmitted drug resistance in the United Kingdom. HIV Medicine, 18(3), 204–213. https://doi.org/10.1111/hiv.12414 

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Vandormael, A., Bärnighausen, T., Herbeck, J., Tomita, A., Phillips, A., Pillay, D., … Tanser, F. (2017). Longitudinal trends in the prevalence of detectable HIV viremia: Population-based evidence from rural KwaZulu-Natal, South Africa. Clinical Infectious Diseases, cix976-cix976. https://doi.org/10.1093/cid/cix976

Vandormael, A., de Oliveira, T., Tanser, F., Bärnighausen, T., & Herbeck, J. T. (2017). High percentage of undiagnosed HIV cases within a hyperendemic South African community: a population-based study. Journal of Epidemiology and Community Health, jech-2017-209713. https://doi.org/10.1136/jech-2017-209713

 

Vandormael, A., de Oliveira, T., Tanser, F., Bärnighausen, T., & Herbeck, J. T. (2017). High percentage of undiagnosed HIV cases within a hyperendemic South African community: a population-based study. Journal of Epidemiology and Community Health, jech-2017-209713. https://doi.org/10.1136/jech-2017-209713

 

Vandormael, A., Dobra, A., Bärnighausen, T., de Oliveira, T., & Tanser, F. (2017). Incidence rate estimation, periodic testing and the limitations of the mid-point imputation approach. International Journal of Epidemiologyhttps://doi.org/10.1093/ije/dyx134

Vandormael, A., Dobra, A., Bärnighausen, T., de Oliveira, T., & Tanser, F. (2017). Incidence rate estimation, periodic testing and the limitations of the mid-point imputation approach. International Journal of Epidemiologyhttps://doi.org/10.1093/ije/dyx134

Vassall, A., Siapka, M., Foster, N., Cunnama, L., Ramma, L., Fielding, K., … Sinanovic, E. (2017). Cost-effectiveness of Xpert MTB/RIF for tuberculosis diagnosis in South Africa: a real-world cost analysis and economic evaluation. The Lancet Global Health, 5(7), e710–e719. https://doi.org/10.1016/S2214-109X(17)30205-X

Vassall, A., Siapka, M., Foster, N., Cunnama, L., Ramma, L., Fielding, K., … Sinanovic, E. (2017). Cost-effectiveness of Xpert MTB/RIF for tuberculosis diagnosis in South Africa: a real-world cost analysis and economic evaluation. The Lancet Global Health, 5(7), e710–e719. https://doi.org/10.1016/S2214-109X(17)30205-X

Vollmer, S., Harttgen, K., Alfven, T., Padayachy, J., Ghys, P., & Bärnighausen, T. (2017). The HIV Epidemic in Sub-Saharan Africa is Aging: Evidence from the Demographic and Health Surveys in Sub-Saharan Africa. AIDS and Behavior, 21(1), 101–113. https://doi.org/10.1007/s10461-016-1591-7

Vollmer, S., Harttgen, K., Alfven, T., Padayachy, J., Ghys, P., & Bärnighausen, T. (2017). The HIV Epidemic in Sub-Saharan Africa is Aging: Evidence from the Demographic and Health Surveys in Sub-Saharan Africa. AIDS and Behavior, 21(1), 101–113. https://doi.org/10.1007/s10461-016-1591-7

Vos, T., Allen, C., Arora, M., Barber, R. M., Bhutta, Z. A., Brown, A., … Murray, C. J. L. (2017). Global, regional, and national incidence, prevalence, and years lived with disability for 310 diseases and injuries, 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1545–1602. https://doi.org/10.1016/S0140-6736(16)31678-6

Vos, T., Allen, C., Arora, M., Barber, R. M., Bhutta, Z. A., Brown, A., … Murray, C. J. L. (2017). Global, regional, and national incidence, prevalence, and years lived with disability for 310 diseases and injuries, 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1545–1602. https://doi.org/10.1016/S0140-6736(16)31678-6

Walsh, F. J., Bärnighausen, T., Delva, W., Fleming, Y., Khumalo, G., Lejeune, C. L., … Okello, V. (2017). Impact of early initiation versus national standard of care of antiretroviral therapy in Swaziland’s public sector health system: study protocol for a stepped-wedge randomized trial. Trials, 18(1), 383. https://doi.org/10.1186/s13063-017-2128-8

Walsh, F. J., Bärnighausen, T., Delva, W., Fleming, Y., Khumalo, G., Lejeune, C. L., … Okello, V. (2017). Impact of early initiation versus national standard of care of antiretroviral therapy in Swaziland’s public sector health system: study protocol for a stepped-wedge randomized trial. Trials, 18(1), 383. https://doi.org/10.1186/s13063-017-2128-8

Wong, E. B., Ndung’u, T., & Kasprowicz, V. O. (2017). The role of mucosal-associated invariant T cells in infectious diseases. Immunology, 150(1), 45–54.  https://doi.org/10.1111/imm.12673 
Wong, E. B., Ndung’u, T., & Kasprowicz, V. O. (2017). The role of mucosal-associated invariant T cells in infectious diseases. Immunology, 150(1), 45–54.  https://doi.org/10.1111/imm.12673

Wringe, A., Moshabela, M., Nyamukapa, C., Bukenya, D., Ondenge, K., Ddaaki, W., … Renju, J. (2017). HIV testing experiences and their implications for patient engagement with HIV care and treatment on the eve of ‘test and treat’: findings from a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052969. https://doi.org/10.1136/sextrans-2016-052969

Wringe, A., Moshabela, M., Nyamukapa, C., Bukenya, D., Ondenge, K., Ddaaki, W., … Renju, J. (2017). HIV testing experiences and their implications for patient engagement with HIV care and treatment on the eve of ‘test and treat’: findings from a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052969. https://doi.org/10.1136/sextrans-2016-052969

Wringe, A., Renju, J., Seeley, J., Moshabela, M., & Skovdal, M. (2017). Bottlenecks to HIV care and treatment in sub-Saharan Africa: a multi-country qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e053172. https://doi.org/10.1136/sextrans-2017-053172

Wringe, A., Renju, J., Seeley, J., Moshabela, M., & Skovdal, M. (2017). Bottlenecks to HIV care and treatment in sub-Saharan Africa: a multi-country qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e053172. https://doi.org/10.1136/sextrans-2017-053172
Yadon, A. N., Maharaj, K., Adamson, J. H., Lai, Y.-P., Sacchettini, J. C., Ioerger, T. R., … Pym, A. S. (2017). A comprehensive characterization of PncA polymorphisms that confer resistance to pyrazinamide. Nature Communications, 8(1), 588. https://doi.org/10.1038/s41467-017-00721-2
Yadon, A. N., Maharaj, K., Adamson, J. H., Lai, Y.-P., Sacchettini, J. C., Ioerger, T. R., … Pym, A. S. (2017). A comprehensive characterization of PncA polymorphisms that confer resistance to pyrazinamide. Nature Communications, 8(1), 588. https://doi.org/10.1038/s41467-017-00721-2
Yates, T. A., Khan, P. Y., Knight, G. M., Taylor, J. G., McHugh, T. D., Lipman, M., … Abubakar, I. (n.d.). The transmission of Mycobacterium tuberculosis in high burden settings. The Lancet Infectious Diseases, 16(2), 227–238. https://doi.org/10.1016/S1473-3099(15)00499-5
Yates, T. A., Khan, P. Y., Knight, G. M., Taylor, J. G., McHugh, T. D., Lipman, M., … Abubakar, I. (n.d.). The transmission of Mycobacterium tuberculosis in high burden settings. The Lancet Infectious Diseases, 16(2), 227–238. https://doi.org/10.1016/S1473-3099(15)00499-5
Zhou, B., Bentham, J., Di Cesare, M., Bixby, H., Danaei, G., Cowan, M. J., … Zuñiga Cisneros, J. (n.d.). Worldwide trends in blood pressure from 1975 to 2015: a pooled analysis of 1479 population-based measurement studies with 19·1 million participants. The Lancet, 389(10064), 37–55. https://doi.org/10.1016/S0140-6736(16)31919-5
Zhou, B., Bentham, J., Di Cesare, M., Bixby, H., Danaei, G., Cowan, M. J., … Zuñiga Cisneros, J. (n.d.). Worldwide trends in blood pressure from 1975 to 2015: a pooled analysis of 1479 population-based measurement studies with 19·1 million participants. The Lancet, 389(10064), 37–55. https://doi.org/10.1016/S0140-6736(16)31919-5
Zhou, B., Bentham, J., Di Cesare, M., Bixby, H., Danaei, G., Cowan, M. J., … Zuñiga Cisneros, J. (n.d.). Worldwide trends in blood pressure from 1975 to 2015: a pooled analysis of 1479 population-based measurement studies with 19·1 million participants. The Lancet, 389(10064), 37–55. https://doi.org/10.1016/S0140-6736(16)31919-5
Zhou, B., Bentham, J., Di Cesare, M., Bixby, H., Danaei, G., Cowan, M. J., … Zuñiga Cisneros, J. (n.d.). Worldwide trends in blood pressure from 1975 to 2015: a pooled analysis of 1479 population-based measurement studies with 19·1 million participants. The Lancet, 389(10064), 37–55. https://doi.org/10.1016/S0140-6736(16)31919-5
Zhukova, A., Cutino-Moguel, T., Gascuel, O., & Pillay, D. (2017). The Role of Phylogenetics as a Tool to Predict the Spread of Resistance. The Journal of Infectious Diseases, jix411-jix411. https://doi.org/10.1093/infdis/jix411
Zhukova, A., Cutino-Moguel, T., Gascuel, O., & Pillay, D. (2017). The Role of Phylogenetics as a Tool to Predict the Spread of Resistance. The Journal of Infectious Diseases, jix411-jix411. https://doi.org/10.1093/infdis/jix411
Zhukova, A., Cutino-Moguel, T., Gascuel, O., & Pillay, D. (2017). The Role of Phylogenetics as a Tool to Predict the Spread of Resistance. The Journal of Infectious Diseases, jix411-jix411. https://doi.org/10.1093/infdis/jix411
Zhukova, A., Cutino-Moguel, T., Gascuel, O., & Pillay, D. (2017). The Role of Phylogenetics as a Tool to Predict the Spread of Resistance. The Journal of Infectious Diseases, jix411-jix411. https://doi.org/10.1093/infdis/jix411
Zulu, M., Naidoo, K., Mncube, Z., Jaggernath, M., Goulder, P. J., Ndung’u, T., … Thobakgale, C. F. (2017). Reduced Expression of Siglec-7, NKG2A and CD57 on Terminally Differentiated CD56-CD16+ NK Cell Subset is associated with NK Cell Dysfunction in Chronic HIV-1 clade C Infection. AIDS Research and Human Retroviruseshttps://doi.org/10.1089/AID.2017.0095
Zulu, M., Naidoo, K., Mncube, Z., Jaggernath, M., Goulder, P. J., Ndung’u, T., … Thobakgale, C. F. (2017). Reduced Expression of Siglec-7, NKG2A and CD57 on Terminally Differentiated CD56-CD16+ NK Cell Subset is associated with NK Cell Dysfunction in Chronic HIV-1 clade C Infection. AIDS Research and Human Retroviruseshttps://doi.org/10.1089/AID.2017.0095
Zulu, M., Naidoo, K., Mncube, Z., Jaggernath, M., Goulder, P. J., Ndung’u, T., … Thobakgale, C. F. (2017). Reduced Expression of Siglec-7, NKG2A and CD57 on Terminally Differentiated CD56-CD16+ NK Cell Subset is associated with NK Cell Dysfunction in Chronic HIV-1 clade C Infection. AIDS Research and Human Retroviruseshttps://doi.org/10.1089/AID.2017.0095
Zulu, M., Naidoo, K., Mncube, Z., Jaggernath, M., Goulder, P. J., Ndung’u, T., … Thobakgale, C. F. (2017). Reduced Expression of Siglec-7, NKG2A and CD57 on Terminally Differentiated CD56-CD16+ NK Cell Subset is associated with NK Cell Dysfunction in Chronic HIV-1 clade C Infection. AIDS Research and Human Retroviruseshttps://doi.org/10.1089/AID.2017.0095
Zuma, T., Wight, D., Rochat, T., & Moshabela, M. (2017). Traditional health practitioners’ management of HIV/AIDS in rural South Africa in the era of widespread antiretroviral therapy. Global Health Action, 10(1), 1352210. https://doi.org/10.1080/16549716.2017.1352210
2016 Publications

Aicken, C. R. H., Fuller, S. S., Sutcliffe, L. J., Estcourt, C. S., Gkatzidou, V., Oakeshott, P., … Shahmanesh, M. (2016). Young people’s perceptions of smartphone-enabled self-testing and online care for sexually transmitted infections: qualitative interview study. BMC Public Health, 16(1), 974. https://doi.org/10.1186/s12889-016-3648-y

Aicken, C. R. H., Fuller, S. S., Sutcliffe, L. J., Estcourt, C. S., Gkatzidou, V., Oakeshott, P., … Shahmanesh, M. (2016). Young people’s perceptions of smartphone-enabled self-testing and online care for sexually transmitted infections: qualitative interview study. BMC Public Health, 16(1), 974. https://doi.org/10.1186/s12889-016-3648-y

Atun, R., Chang, A. Y., Ogbuoji, O., Silva, S., Resch, S., Hontelez, J., & Bärnighausen, T. (2016). Long-term financing needs for HIV control in sub-Saharan Africa in 2015–2050: a modelling study. BMJ Open, 6(3). https://doi.org/10.1136/bmjopen-2015-009656

Atun, R., Chang, A. Y., Ogbuoji, O., Silva, S., Resch, S., Hontelez, J., & Bärnighausen, T. (2016). Long-term financing needs for HIV control in sub-Saharan Africa in 2015–2050: a modelling study. BMJ Open, 6(3). https://doi.org/10.1136/bmjopen-2015-009656

Barnhart, D., Hertzmark, E., Liu, E., Mungure, E., Muya, A. N., Sando, D., … Spiegelman, D. (2016). Intra-cluster correlation estimates for HIV-related outcomes from care and treatment clinics in Dar es Salaam, Tanzania. Contemporary Clinical Trials Communications, 4, 161–169. https://doi.org/10.1016/j.conctc.2016.09.001

Barnhart, D., Hertzmark, E., Liu, E., Mungure, E., Muya, A. N., Sando, D., … Spiegelman, D. (2016). Intra-cluster correlation estimates for HIV-related outcomes from care and treatment clinics in Dar es Salaam, Tanzania. Contemporary Clinical Trials Communications, 4, 161–169. https://doi.org/10.1016/j.conctc.2016.09.001

BCCP: Botswana Combination Prevention Project. clinicaltrials.gov. 2015. https://clinicaltrials.gov/ct2/show/NCT01965470. Accessed 1 Sept 2016. (n.d.). Retrieved from https://clinicaltrials.gov/ct2/show/NCT01965470

BCCP: Botswana Combination Prevention Project. clinicaltrials.gov. 2015. https://clinicaltrials.gov/ct2/show/NCT01965470. Accessed 1 Sept 2016. (n.d.). Retrieved from https://clinicaltrials.gov/ct2/show/NCT01965470

Bohlius, J., Maxwell, N., Spoerri, A., Wainwright, R., Sawry, S., Poole, J., … for IeDEA-Southern Africa. (2016). Incidence of AIDS-Defining and Other Cancers in HIV-Positive Children in South Africa: Record Linkage Study. The Pediatric Infectious Disease Journal, 35(6), e164–e170. https://doi.org/10.1097/INF.0000000000001117

Bohlius, J., Maxwell, N., Spoerri, A., Wainwright, R., Sawry, S., Poole, J., … for IeDEA-Southern Africa. (2016). Incidence of AIDS-Defining and Other Cancers in HIV-Positive Children in South Africa: Record Linkage Study. The Pediatric Infectious Disease Journal, 35(6), e164–e170. https://doi.org/10.1097/INF.0000000000001117

 

Boullé, M., Müller, T. G., Dähling, S., Ganga, Y., Jackson, L., Mahamed, D., … Sigal, A. (2016). HIV Cell-to-Cell Spread Results in Earlier Onset of Viral Gene Expression by Multiple Infections per Cell. PLOS Pathogens, 12(11), e1005964. https://doi.org/10.1371/journal.ppat.1005964

 

Boullé, M., Müller, T. G., Dähling, S., Ganga, Y., Jackson, L., Mahamed, D., … Sigal, A. (2016). HIV Cell-to-Cell Spread Results in Earlier Onset of Viral Gene Expression by Multiple Infections per Cell. PLOS Pathogens, 12(11), e1005964. https://doi.org/10.1371/journal.ppat.1005964

Boyer, S., Iwuji, C., Gosset, A., Protopopescu, C., Okesola, N., Plazy, M., … on behalf of the ANRS 12249 TasP study group. (2016). Factors associated with antiretroviral treatment initiation amongst HIV-positive individuals linked to care within a universal test and treat programme: early findings of the ANRS 12249 TasP trial in rural South Africa. AIDS Care, 28(Suppl 3), 39–51. https://doi.org/10.1080/09540121.2016.1164808

Boyer, S., Iwuji, C., Gosset, A., Protopopescu, C., Okesola, N., Plazy, M., … on behalf of the ANRS 12249 TasP study group. (2016). Factors associated with antiretroviral treatment initiation amongst HIV-positive individuals linked to care within a universal test and treat programme: early findings of the ANRS 12249 TasP trial in rural South Africa. AIDS Care, 28(Suppl 3), 39–51. https://doi.org/10.1080/09540121.2016.1164808

Brice, J., Sylla, M., Sayon, S., Telly, F., Bocar-Fofana, D., Murphy, R., … Maiga, A. I. (2016). Qualitative and quantitative HIV antibodies and viral reservoir size characterization in vertically infected children with virological suppression. Journal of Antimicrobial Chemotherapy, dkw537. https://doi.org/10.1093/jac/dkw537

Brice, J., Sylla, M., Sayon, S., Telly, F., Bocar-Fofana, D., Murphy, R., … Maiga, A. I. (2016). Qualitative and quantitative HIV antibodies and viral reservoir size characterization in vertically infected children with virological suppression. Journal of Antimicrobial Chemotherapy, dkw537. https://doi.org/10.1093/jac/dkw537

Bärnighausen, T., Bloom, D. E., & Humair, S. (2016). Human Resources for Treating HIV/AIDS: Are the Preventive Effects of Antiretroviral Treatment a Game Changer? PLOS ONE, 11(10), e0163960. https://doi.org/10.1371/journal.pone.0163960

Bärnighausen, T., Bloom, D. E., & Humair, S. (2016). Human Resources for Treating HIV/AIDS: Are the Preventive Effects of Antiretroviral Treatment a Game Changer? PLOS ONE, 11(10), e0163960. https://doi.org/10.1371/journal.pone.0163960

Byrne, E. H., Anahtar, M. N., Cohen, K. E., Moodley, A., Padavattan, N., Ismail, N., … Kwon, D. S. (2016). Association between injectable progestin-only contraceptives and HIV acquisition and HIV target cell frequency in the female genital tract in South African women: a prospective cohort study. The Lancet Infectious Diseases, 16(4), 441–448. https://doi.org/10.1016/S1473-3099(15)00429-6

Byrne, E. H., Anahtar, M. N., Cohen, K. E., Moodley, A., Padavattan, N., Ismail, N., … Kwon, D. S. (2016). Association between injectable progestin-only contraceptives and HIV acquisition and HIV target cell frequency in the female genital tract in South African women: a prospective cohort study. The Lancet Infectious Diseases, 16(4), 441–448. https://doi.org/10.1016/S1473-3099(15)00429-6

Carlson, J. M., Du, V. Y., Pfeifer, N., Bansal, A., Tan, V. Y. F., Power, K., … Goepfert, P. A. (2016). Impact of pre-adapted HIV transmission. Nature Medicine, 22(6), 606–613. https://doi.org/10.1038/nm.4100

Carlson, J. M., Du, V. Y., Pfeifer, N., Bansal, A., Tan, V. Y. F., Power, K., … Goepfert, P. A. (2016). Impact of pre-adapted HIV transmission. Nature Medicine, 22(6), 606–613. https://doi.org/10.1038/nm.4100

Channon, M., Hosegood, V., & McGrath, N. (2016). A longitudinal population-based analysis of relationship status and mortality in KwaZulu-Natal, South Africa 2001–2011. Journal of Epidemiology and Community Health, 70(1), 56–64. https://doi.org/10.1136/jech-2014-205408

Channon, M., Hosegood, V., & McGrath, N. (2016). A longitudinal population-based analysis of relationship status and mortality in KwaZulu-Natal, South Africa 2001–2011. Journal of Epidemiology and Community Health, 70(1), 56–64. https://doi.org/10.1136/jech-2014-205408

Chen, Z., Hu, Y., Cumming, B. M., Lu, P., Feng, L., Deng, J., … Chen, S. (n.d.). Mycobacterial WhiB6 Differentially Regulates ESX-1 and the Dos Regulon to Modulate Granuloma Formation and Virulence in Zebrafish. Cell Reports, 16(9), 2512–2524. https://doi.org/10.1016/j.celrep.2016.07.080

Chen, Z., Hu, Y., Cumming, B. M., Lu, P., Feng, L., Deng, J., … Chen, S. (n.d.). Mycobacterial WhiB6 Differentially Regulates ESX-1 and the Dos Regulon to Modulate Granuloma Formation and Virulence in Zebrafish. Cell Reports, 16(9), 2512–2524. https://doi.org/10.1016/j.celrep.2016.07.080

Chetty, T., Thorne, C., Tanser, F., Bärnighausen, T., & Coutsoudis, A. (2016). Cohort profile: the Hlabisa pregnancy cohort, KwaZulu-Natal, South Africa. BMJ Open, 6(10), e012088. https://doi.org/10.1136/bmjopen-2016-012088

Chetty, T., Thorne, C., Tanser, F., Bärnighausen, T., & Coutsoudis, A. (2016). Cohort profile: the Hlabisa pregnancy cohort, KwaZulu-Natal, South Africa. BMJ Open, 6(10), e012088. https://doi.org/10.1136/bmjopen-2016-012088

Chikovore, J., Gillespie, N., McGrath, N., Orne-Gliemann, J., Zuma, T., & On Behalf of the ANRS 12249 TasP Study Group. (2016). Men, masculinity, and engagement with treatment as prevention in KwaZulu-Natal, South Africa. AIDS Care, 28(sup3), 74–82. https://doi.org/10.1080/09540121.2016.1178953

Chikovore, J., Gillespie, N., McGrath, N., Orne-Gliemann, J., Zuma, T., & On Behalf of the ANRS 12249 TasP Study Group. (2016). Men, masculinity, and engagement with treatment as prevention in KwaZulu-Natal, South Africa. AIDS Care, 28(sup3), 74–82. https://doi.org/10.1080/09540121.2016.1178953

Chinta, K. C., Saini, V., Glasgow, J. N., Mazorodze, J. H., Rahman, M. A., Reddy, D., … Steyn, A. J. C. (2016). The emerging role of gasotransmitters in the pathogenesis of tuberculosis. Nitric Oxide, 59, 28–41. https://doi.org/10.1016/j.niox.2016.06.009

Chinta, K. C., Saini, V., Glasgow, J. N., Mazorodze, J. H., Rahman, M. A., Reddy, D., … Steyn, A. J. C. (2016). The emerging role of gasotransmitters in the pathogenesis of tuberculosis. Nitric Oxide, 59, 28–41. https://doi.org/10.1016/j.niox.2016.06.009

Cohen, K. A., El-Hay, T., Wyres, K. L., Weissbrod, O., Munsamy, V., Yanover, C., … Pym, A. S. (n.d.). Paradoxical Hypersusceptibility of Drug-resistant Mycobacteriumtuberculosis to β-lactam Antibiotics. EBioMedicine, 9, 170–179. https://doi.org/10.1016/j.ebiom.2016.05.041

Cohen, K. A., El-Hay, T., Wyres, K. L., Weissbrod, O., Munsamy, V., Yanover, C., … Pym, A. S. (n.d.). Paradoxical Hypersusceptibility of Drug-resistant Mycobacteriumtuberculosis to β-lactam Antibiotics. EBioMedicine, 9, 170–179. https://doi.org/10.1016/j.ebiom.2016.05.041

Conroy, A. A., McGrath, N., van Rooyen, H., Hosegood, V., Johnson, M. O., Fritz, K., … Darbes, L. A. (2016). Power and the association with relationship quality in South African couples: Implications for HIV/AIDS interventions. Social Science & Medicine, 153, 1–11. https://doi.org/10.1016/j.socscimed.2016.01.035

Conroy, A. A., McGrath, N., van Rooyen, H., Hosegood, V., Johnson, M. O., Fritz, K., … Darbes, L. A. (2016). Power and the association with relationship quality in South African couples: Implications for HIV/AIDS interventions. Social Science & Medicine, 153, 1–11. https://doi.org/10.1016/j.socscimed.2016.01.035

 Delva, W., Leventhal, G. E., & Helleringer, S. (2016). Connecting the dots: network data and models in HIV epidemiology. AIDS, 30. https://doi.org/10.1097/QAD.0000000000001184

 Delva, W., Leventhal, G. E., & Helleringer, S. (2016). Connecting the dots: network data and models in HIV epidemiology. AIDS, 30. https://doi.org/10.1097/QAD.0000000000001184

Desjardins, C. A., Cohen, K. A., Munsamy, V., Abeel, T., Maharaj, K., Walker, B. J., … Pym, A. S. (2016). Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance. Nature Genetics, 48(5), 544–551. https://doi.org/10.1038/ng.3548

Desjardins, C. A., Cohen, K. A., Munsamy, V., Abeel, T., Maharaj, K., Walker, B. J., … Pym, A. S. (2016). Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance. Nature Genetics, 48(5), 544–551. https://doi.org/10.1038/ng.3548

Dimitrov, D. T., Boily, M.-C., Hallett, T. B., Albert, J., Boucher, C., Mellors, J. W., … van de Vijver, D. A. M. C. (2016). How Much Do We Know about Drug Resistance Due to PrEP Use? Analysis of Experts’ Opinion and Its Influence on the Projected Public Health Impact. PLoS ONE, 11(7), e0158620. https://doi.org/10.1371/journal.pone.0158620

Dimitrov, D. T., Boily, M.-C., Hallett, T. B., Albert, J., Boucher, C., Mellors, J. W., … van de Vijver, D. A. M. C. (2016). How Much Do We Know about Drug Resistance Due to PrEP Use? Analysis of Experts’ Opinion and Its Influence on the Projected Public Health Impact. PLoS ONE, 11(7), e0158620. https://doi.org/10.1371/journal.pone.0158620

El Bouzidi, K., White, E., Mbisa, J. L., Sabin, C. A., Phillips, A. N., Mackie, N., … Dunn, D. T. (2016). HIV-1 drug resistance mutations emerging on darunavir therapy in PI-naive and -experienced patients in the UK. Journal of Antimicrobial Chemotherapy, 71(12), 3487–3494. https://doi.org/10.1093/jac/dkw343

El Bouzidi, K., White, E., Mbisa, J. L., Sabin, C. A., Phillips, A. N., Mackie, N., … Dunn, D. T. (2016). HIV-1 drug resistance mutations emerging on darunavir therapy in PI-naive and -experienced patients in the UK. Journal of Antimicrobial Chemotherapy, 71(12), 3487–3494. https://doi.org/10.1093/jac/dkw343

Evangeli, M., Newell, M.-L., & McGrath, N. (2016). Factors associated with pre-ART loss-to-follow up in adults in rural KwaZulu-Natal, South Africa: a prospective cohort study. BMC Public Health, 16(1), 358. https://doi.org/10.1186/s12889-016-3025-x

Evangeli, M., Newell, M.-L., & McGrath, N. (2016). Factors associated with pre-ART loss-to-follow up in adults in rural KwaZulu-Natal, South Africa: a prospective cohort study. BMC Public Health, 16(1), 358. https://doi.org/10.1186/s12889-016-3025-x

Feigl, A. B., Bloom, D. E., Danaei, G., Pillay, D., Salomon, J. A., Tanser, F., & Bärnighausen, T. W. (2016). The Effect of HIV and the Modifying Effect of Anti-Retroviral Therapy (ART) on Body Mass Index (BMI) and Blood Pressure Levels in Rural South Africa. PLOS ONE, 11(8), e0158264. https://doi.org/10.1371/journal.pone.0158264

Feigl, A. B., Bloom, D. E., Danaei, G., Pillay, D., Salomon, J. A., Tanser, F., & Bärnighausen, T. W. (2016). The Effect of HIV and the Modifying Effect of Anti-Retroviral Therapy (ART) on Body Mass Index (BMI) and Blood Pressure Levels in Rural South Africa. PLOS ONE, 11(8), e0158264. https://doi.org/10.1371/journal.pone.0158264

Ferns, R. B., Tarr, A. W., Hue, S., Urbanowicz, R. A., McClure, C. P., Gilson, R., … Pillay, D. (2016). Hepatitis C virus quasispecies and pseudotype analysis from acute infection to chronicity in HIV-1 co-infected individuals. Virology, 492, 213–224. https://doi.org/10.1016/j.virol.2016.02.003

Ferns, R. B., Tarr, A. W., Hue, S., Urbanowicz, R. A., McClure, C. P., Gilson, R., … Pillay, D. (2016). Hepatitis C virus quasispecies and pseudotype analysis from acute infection to chronicity in HIV-1 co-infected individuals. Virology, 492, 213–224. https://doi.org/10.1016/j.virol.2016.02.003

Fox, M. P., Rosen, S., Geldsetzer, P., Bärnighausen, T., Negussie, E., & Beanland, R. (2016). Interventions to improve the rate or timing of initiation of antiretroviral therapy for HIV in sub-Saharan Africa: meta-analyses of effectiveness. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20888

Fox, M. P., Rosen, S., Geldsetzer, P., Bärnighausen, T., Negussie, E., & Beanland, R. (2016). Interventions to improve the rate or timing of initiation of antiretroviral therapy for HIV in sub-Saharan Africa: meta-analyses of effectiveness. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20888

Garrett, N. J., McGrath, N., & Mindel, A. (2017). Advancing STI care in low/middle-income countries: has STI syndromic management reached its use-by date? Sexually Transmitted Infections, 93(1), 4. https://doi.org/10.1136/sextrans-2016-052581

Garrett, N. J., McGrath, N., & Mindel, A. (2017). Advancing STI care in low/middle-income countries: has STI syndromic management reached its use-by date? Sexually Transmitted Infections, 93(1), 4. https://doi.org/10.1136/sextrans-2016-052581

Geldsetzer, P., Fink, G., Vaikath, M., & Bärnighausen, T. (2016). Sampling for Patient Exit Interviews: Assessment of Methods Using Mathematical Derivation and Computer Simulations. Health Services Research. https://doi.org/10.1111/1475-6773.12611

Geldsetzer, P., Fink, G., Vaikath, M., & Bärnighausen, T. (2016). Sampling for Patient Exit Interviews: Assessment of Methods Using Mathematical Derivation and Computer Simulations. Health Services Research. https://doi.org/10.1111/1475-6773.12611

Geldsetzer, P., Ortblad, K., & Bärnighausen, T. (2016). The efficiency of chronic disease care in sub-Saharan Africa. BMC Medicine, 14(1). https://doi.org/10.1186/s12916-016-0675-6

Geldsetzer, P., Ortblad, K., & Bärnighausen, T. (2016). The efficiency of chronic disease care in sub-Saharan Africa. BMC Medicine, 14(1). https://doi.org/10.1186/s12916-016-0675-6

Geldsetzer, P., Yapa, H. M. N., Vaikath, M., Ogbuoji, O., Fox, M. P., Essajee, S. M., … Bärnighausen, T. (2016). A systematic review of interventions to improve postpartum retention of women in PMTCT and ART care. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20679

Geldsetzer, P., Yapa, H. M. N., Vaikath, M., Ogbuoji, O., Fox, M. P., Essajee, S. M., … Bärnighausen, T. (2016). A systematic review of interventions to improve postpartum retention of women in PMTCT and ART care. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20679

Ginsburg, C., Bocquier, P., Béguy, D., Afolabi, S., Augusto, O., Derra, K., … Collinson, M. A. (2016). Healthy or unhealthy migrants? Identifying internal migration effects on mortality in Africa using health and demographic surveillance systems of the INDEPTH network. Social Science & Medicine, 164, 59–73. https://doi.org/10.1016/j.socscimed.2016.06.035

Ginsburg, C., Bocquier, P., Béguy, D., Afolabi, S., Augusto, O., Derra, K., … Collinson, M. A. (2016). Healthy or unhealthy migrants? Identifying internal migration effects on mortality in Africa using health and demographic surveillance systems of the INDEPTH network. Social Science & Medicine, 164, 59–73. https://doi.org/10.1016/j.socscimed.2016.06.035

Ginsburg, C., Bocquier, P., Béguy, D., Afolabi, S., Augusto, O., Derra, K., … Collinson, M. A. (2016). Healthy or unhealthy migrants? Identifying internal migration effects on mortality in Africa using health and demographic surveillance systems of the INDEPTH network. Social Science & Medicine, 164, 59–73. https://doi.org/10.1016/j.socscimed.2016.06.035

Ginsburg, C., Bocquier, P., Béguy, D., Afolabi, S., Augusto, O., Derra, K., … Collinson, M. A. (2016). Healthy or unhealthy migrants? Identifying internal migration effects on mortality in Africa using health and demographic surveillance systems of the INDEPTH network. Social Science & Medicine, 164, 59–73. https://doi.org/10.1016/j.socscimed.2016.06.035

Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. (2016). The Lancet Infectious Diseases, 16(5), 565–575. https://doi.org/10.1016/S1473-3099(15)00536-8

Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. (2016). The Lancet Infectious Diseases, 16(5), 565–575. https://doi.org/10.1016/S1473-3099(15)00536-8

Gosmann, C., Anahtar, M. N., Handley, S. A., Farcasanu, M., Abu-Ali, G., Bowman, B. A., … Kwon, D. S. (n.d.). Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women. Immunity, 46(1), 29–37. https://doi.org/10.1016/j.immuni.2016.12.013

Gosmann, C., Anahtar, M. N., Handley, S. A., Farcasanu, M., Abu-Ali, G., Bowman, B. A., … Kwon, D. S. (n.d.). Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women. Immunity, 46(1), 29–37. https://doi.org/10.1016/j.immuni.2016.12.013

Gounder, K., Oyaro, M., Padayachi, N., Zulu, T. M., de Oliveira, T., Wylie, J., & Ndung’u, T. (2017). Complex Subtype Diversity of HIV-1 Among Drug Users in Major Kenyan Cities. AIDS Research and Human Retroviruses, 33(5), 500–510. https://doi.org/10.1089/aid.2016.0321

Gounder, K., Oyaro, M., Padayachi, N., Zulu, T. M., de Oliveira, T., Wylie, J., & Ndung’u, T. (2017). Complex Subtype Diversity of HIV-1 Among Drug Users in Major Kenyan Cities. AIDS Research and Human Retroviruses, 33(5), 500–510. https://doi.org/10.1089/aid.2016.0321

Grimsrud, A., Cornell, M., Schomaker, M., Fox, M. P., Orrell, C., Prozesky, H., … Myer, L. (2016). CD4 count at antiretroviral therapy initiation and the risk of loss to follow-up: results from a multicentre cohort study. Journal of Epidemiology and Community Health, 70(6), 549–555. https://doi.org/10.1136/jech-2015-206629

Grimsrud, A., Cornell, M., Schomaker, M., Fox, M. P., Orrell, C., Prozesky, H., … Myer, L. (2016). CD4 count at antiretroviral therapy initiation and the risk of loss to follow-up: results from a multicentre cohort study. Journal of Epidemiology and Community Health, 70(6), 549–555. https://doi.org/10.1136/jech-2015-206629

 Haber, N., Pillay, D., Porter, K., & Bärnighausen, T. (2016). Constructing the cascade of HIV care: methods for measurement. Current Opinion in HIV and AIDS, 11(1), 102–108. https://doi.org/10.1097/COH.0000000000000212

 Haber, N., Pillay, D., Porter, K., & Bärnighausen, T. (2016). Constructing the cascade of HIV care: methods for measurement. Current Opinion in HIV and AIDS, 11(1), 102–108. https://doi.org/10.1097/COH.0000000000000212

Harling, G., & Bärnighausen, T. (2016). The role of partners’ educational attainment in the association between HIV and education amongst women in seven sub-Saharan African countries. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20038

Harling, G., & Bärnighausen, T. (2016). The role of partners’ educational attainment in the association between HIV and education amongst women in seven sub-Saharan African countries. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20038

Heidebrecht, C. L., Podewils, L. J., Pym, A. S., Cohen, T., Mthiyane, T., & Wilson, D. (2016). Assessing the utility of Xpert® MTB/RIF as a screening tool for patients admitted to medical wards in South Africa, 6, 19391.

Heidebrecht, C. L., Podewils, L. J., Pym, A. S., Cohen, T., Mthiyane, T., & Wilson, D. (2016). Assessing the utility of Xpert® MTB/RIF as a screening tool for patients admitted to medical wards in South Africa, 6, 19391.

Heidebrecht, C. L., Podewils, L. J., Pym, A., Mthiyane, T., & Cohen, T. (2016). Assessing Local Risk of Rifampicin-Resistant Tuberculosis in KwaZulu-Natal, South Africa Using Lot Quality Assurance Sampling. PLOS ONE, 11(4), e0153143. https://doi.org/10.1371/journal.pone.0153143

Heidebrecht, C. L., Podewils, L. J., Pym, A., Mthiyane, T., & Cohen, T. (2016). Assessing Local Risk of Rifampicin-Resistant Tuberculosis in KwaZulu-Natal, South Africa Using Lot Quality Assurance Sampling. PLOS ONE, 11(4), e0153143. https://doi.org/10.1371/journal.pone.0153143

Hennig, S., Naiker, S., Reddy, T., Egan, D., Kellerman, T., Wiesner, L., … Pym, A. (2016). Effect of SLCO1B1 Polymorphisms on Rifabutin Pharmacokinetics in African HIV-Infected Patients with Tuberculosis. Antimicrobial Agents and Chemotherapy, 60(1), 617–620. https://doi.org/10.1128/AAC.01195-15

Hennig, S., Naiker, S., Reddy, T., Egan, D., Kellerman, T., Wiesner, L., … Pym, A. (2016). Effect of SLCO1B1 Polymorphisms on Rifabutin Pharmacokinetics in African HIV-Infected Patients with Tuberculosis. Antimicrobial Agents and Chemotherapy, 60(1), 617–620. https://doi.org/10.1128/AAC.01195-15

Hennig, S., Svensson, E. M., Niebecker, R., Fourie, P. B., Weiner, M. H., Bonora, S., … Karlsson, M. O. (2016). Population pharmacokinetic drug–drug interaction pooled analysis of existing data for rifabutin and HIV PIs. Journal of Antimicrobial Chemotherapy, 71(5), 1330–1340. https://doi.org/10.1093/jac/dkv470

Hennig, S., Svensson, E. M., Niebecker, R., Fourie, P. B., Weiner, M. H., Bonora, S., … Karlsson, M. O. (2016). Population pharmacokinetic drug–drug interaction pooled analysis of existing data for rifabutin and HIV PIs. Journal of Antimicrobial Chemotherapy, 71(5), 1330–1340. https://doi.org/10.1093/jac/dkv470

Herbeck, J., & Tanser, F. (2016). Community viral load as an index of HIV transmission potential. The Lancet HIV, 3(4), e152–e154. https://doi.org/10.1016/S2352-3018(16)00036-9

Herbeck, J., & Tanser, F. (2016). Community viral load as an index of HIV transmission potential. The Lancet HIV, 3(4), e152–e154. https://doi.org/10.1016/S2352-3018(16)00036-9

Hontelez, J. A. C., Tanser, F. C., Naidu, K. K., Pillay, D., & Bärnighausen, T. (2016). The Effect of Antiretroviral Treatment on Health Care Utilization in Rural South Africa: A Population-Based Cohort Study. PLOS ONE, 11(7), e0158015. https://doi.org/10.1371/journal.pone.0158015

Hontelez, J. A. C., Tanser, F. C., Naidu, K. K., Pillay, D., & Bärnighausen, T. (2016). The Effect of Antiretroviral Treatment on Health Care Utilization in Rural South Africa: A Population-Based Cohort Study. PLOS ONE, 11(7), e0158015. https://doi.org/10.1371/journal.pone.0158015

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Iwuji, C. C., Orne-Gliemann, J., Larmarange, J., Okesola, N., Tanser, F., Thiebaut, R., … ANRS 12249 TasP trial group. (2016). Uptake of Home-Based HIV Testing, Linkage to Care, and Community Attitudes about ART in Rural KwaZulu-Natal, South Africa: Descriptive Results from the First Phase of the ANRS 12249 TasP Cluster-Randomised Trial. PLOS Medicine, 13(8), e1002107. https://doi.org/10.1371/journal.pmed.1002107

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 Jaggernath, M., Naicker, R., Madurai, S., Brockman, M. A., Ndung’u, T., & Gelderblom, H. C. (2016). Diagnostic Accuracy of the HemoCue Hb 301, STAT-Site MHgb and URIT-12 Point-of-Care Hemoglobin Meters in a Central Laboratory and a Community Based Clinic in Durban, South Africa. PLOS ONE, 11(4), e0152184. https://doi.org/10.1371/journal.pone.0152184

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Jain, P., Weinrick, B. C., Kalivoda, E. J., Yang, H., Munsamy, V., Vilcheze, C., … Jacobs, W. R. (2016). Dual-Reporter Mycobacteriophages (Φ 2 DRMs) Reveal Preexisting Mycobacterium tuberculosis Persistent Cells in Human Sputum. MBio, 7(5), e01023-16. https://doi.org/10.1128/mBio.01023-16

Jain, P., Weinrick, B. C., Kalivoda, E. J., Yang, H., Munsamy, V., Vilcheze, C., … Jacobs, W. R. (2016). Dual-Reporter Mycobacteriophages (Φ 2 DRMs) Reveal Preexisting Mycobacterium tuberculosis Persistent Cells in Human Sputum. MBio, 7(5), e01023-16. https://doi.org/10.1128/mBio.01023-16

Johnson, L. F., Keiser, O., Fox, M. P., Tanser, F., Cornell, M., Hoffmann, C. J., … for the International Epidemiologic Databases to Evaluate AIDS Southern Africa (IeDEA-SA) Collaboration. (2016). Life expectancy trends in adults on antiretroviral treatment in South Africa. AIDS, 30(16). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2016/10230/Life_expectancy_trends_in_adults_on_antiretroviral.16.aspx

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Kaposi Sarcoma Risk in HIV-Infected Children and Adolescents on Combination Antiretroviral Therapy From Sub-Saharan Africa, Europe, and Asia. (2016). Clinical Infectious Diseases, ciw519. https://doi.org/10.1093/cid/ciw519

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Karat, A. S., Omar, T., von Gottberg, A., Tlali, M., Chihota, V. N., Churchyard, G. J., … Grant, A. D. (2016). Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa. PLOS ONE, 11(11), e0166158. https://doi.org/10.1371/journal.pone.0166158

Karat, A. S., Omar, T., von Gottberg, A., Tlali, M., Chihota, V. N., Churchyard, G. J., … Grant, A. D. (2016). Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa. PLOS ONE, 11(11), e0166158. https://doi.org/10.1371/journal.pone.0166158

Karnon, J., & Orji, N. (2016). Option B+ for the prevention of mother-to-child transmission of HIV infection in developing countries: a review of published cost-effectiveness analyses. Health Policy Plan, 31. https://doi.org/10.1093/heapol/czw025

Karnon, J., & Orji, N. (2016). Option B+ for the prevention of mother-to-child transmission of HIV infection in developing countries: a review of published cost-effectiveness analyses. Health Policy Plan, 31. https://doi.org/10.1093/heapol/czw025

Kasprowicz, V. O., Cheng, T.-Y., Ndung’u, T., Sunpath, H., Moody, D. B., & Kasmar, A. G. (2016). HIV Disrupts Human T Cells That Target Mycobacterial Glycolipids. Journal of Infectious Diseases, 213(4), 628–633. https://doi.org/10.1093/infdis/jiv455

Kasprowicz, V. O., Cheng, T.-Y., Ndung’u, T., Sunpath, H., Moody, D. B., & Kasmar, A. G. (2016). HIV Disrupts Human T Cells That Target Mycobacterial Glycolipids. Journal of Infectious Diseases, 213(4), 628–633. https://doi.org/10.1093/infdis/jiv455

Kassebaum, N. J., Arora, M., Barber, R. M., Bhutta, Z. A., Brown, J., Carter, A., … Murray, C. J. L. (2016). Global, regional, and national disability-adjusted life-years (DALYs) for 315 diseases and injuries and healthy life expectancy (HALE), 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1603–1658. https://doi.org/10.1016/S0140-6736(16)31460-X

Kassebaum, N. J., Arora, M., Barber, R. M., Bhutta, Z. A., Brown, J., Carter, A., … Murray, C. J. L. (2016). Global, regional, and national disability-adjusted life-years (DALYs) for 315 diseases and injuries and healthy life expectancy (HALE), 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1603–1658. https://doi.org/10.1016/S0140-6736(16)31460-X

Kassebaum, N. J., Barber, R. M., Bhutta, Z. A., Dandona, L., Gething, P. W., Hay, S. I., … Murray, C. J. L. (2016). Global, regional, and national levels of maternal mortality, 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1775–1812. https://doi.org/10.1016/S0140-6736(16)31470-2

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Kløverpris, H. N., Kazer, S. W., Mjösberg, J., Mabuka, J. M., Wellmann, A., Ndhlovu, Z., … Leslie, A. (2016). Innate Lymphoid Cells Are Depleted Irreversibly during Acute HIV-1 Infection in the Absence of Viral Suppression. Immunity, 44(2), 391–405. https://doi.org/10.1016/j.immuni.2016.01.006

Kløverpris, H. N., Kazer, S. W., Mjösberg, J., Mabuka, J. M., Wellmann, A., Ndhlovu, Z., … Leslie, A. (2016). Innate Lymphoid Cells Are Depleted Irreversibly during Acute HIV-1 Infection in the Absence of Viral Suppression. Immunity, 44(2), 391–405. https://doi.org/10.1016/j.immuni.2016.01.006

Koofhethile, C. K., Ndhlovu, Z. M., Thobakgale-Tshabalala, C., Prado, J. G., Ismail, N., Mncube, Z., … Ndung’u, T. (2016). CD8 + T Cell Breadth and Ex Vivo Virus Inhibition Capacity Distinguish between Viremic Controllers with and without Protective HLA Class I Alleles. Journal of Virology, 90(15), 6818–6831. https://doi.org/10.1128/JVI.00276-16

Koofhethile, C. K., Ndhlovu, Z. M., Thobakgale-Tshabalala, C., Prado, J. G., Ismail, N., Mncube, Z., … Ndung’u, T. (2016). CD8 + T Cell Breadth and Ex Vivo Virus Inhibition Capacity Distinguish between Viremic Controllers with and without Protective HLA Class I Alleles. Journal of Virology, 90(15), 6818–6831. https://doi.org/10.1128/JVI.00276-16

Koto, M. V., & Maharaj, P. (2016). Difficulties facing healthcare workers in the era of AIDS treatment in Lesotho. Sahara J, 13. https://doi.org/10.1080/17290376.2016.1179588

Koto, M. V., & Maharaj, P. (2016). Difficulties facing healthcare workers in the era of AIDS treatment in Lesotho. Sahara J, 13. https://doi.org/10.1080/17290376.2016.1179588

Lamprecht, D. A., Finin, P. M., Rahman, M. A., Cumming, B. M., Russell, S. L., Jonnala, S. R., … Steyn, A. J. C. (2016). Turning the respiratory flexibility of Mycobacterium tuberculosis against itself. Nature Communications, 7, 12393. https://doi.org/10.1038/ncomms12393

Lamprecht, D. A., Finin, P. M., Rahman, M. A., Cumming, B. M., Russell, S. L., Jonnala, S. R., … Steyn, A. J. C. (2016). Turning the respiratory flexibility of Mycobacterium tuberculosis against itself. Nature Communications, 7, 12393. https://doi.org/10.1038/ncomms12393

Leitman, E. M., Hurst, J., Mori, M., Kublin, J., Ndung’u, T., Walker, B. D., … Goulder, P. J. R. (2016). Lower Viral Loads and Slower CD4+ T-Cell Count Decline in MRKAd5 HIV-1 Vaccinees Expressing Disease-Susceptible HLA-B*58:02. The Journal of Infectious Diseases, 214(3), 379–389. https://doi.org/10.1093/infdis/jiw093

Leitman, E. M., Hurst, J., Mori, M., Kublin, J., Ndung’u, T., Walker, B. D., … Goulder, P. J. R. (2016). Lower Viral Loads and Slower CD4+ T-Cell Count Decline in MRKAd5 HIV-1 Vaccinees Expressing Disease-Susceptible HLA-B*58:02. The Journal of Infectious Diseases, 214(3), 379–389. https://doi.org/10.1093/infdis/jiw093

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 Rochat, T. J., Mitchell, J., Stein, A., Mkwanazi, N. B., & Bland, R. M. (2016). The Amagugu Intervention: A Conceptual Framework for Increasing HIV Disclosure and Parent-Led Communication about Health among HIV-Infected Parents with HIV-Uninfected Primary School-Aged Children. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00183

 Rochat, T. J., Mitchell, J., Stein, A., Mkwanazi, N. B., & Bland, R. M. (2016). The Amagugu Intervention: A Conceptual Framework for Increasing HIV Disclosure and Parent-Led Communication about Health among HIV-Infected Parents with HIV-Uninfected Primary School-Aged Children. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00183

Saini, V., Cumming, B. M., Guidry, L., Lamprecht, D. A., Adamson, J. H., Reddy, V. P., … Steyn, A. J. C. (2016). Ergothioneine Maintains Redox and Bioenergetic Homeostasis Essential for Drug Susceptibility and Virulence of Mycobacterium tuberculosis. Cell Reports, 14(3), 572–585. https://doi.org/10.1016/j.celrep.2015.12.056

Saini, V., Cumming, B. M., Guidry, L., Lamprecht, D. A., Adamson, J. H., Reddy, V. P., … Steyn, A. J. C. (2016). Ergothioneine Maintains Redox and Bioenergetic Homeostasis Essential for Drug Susceptibility and Virulence of Mycobacterium tuberculosis. Cell Reports, 14(3), 572–585. https://doi.org/10.1016/j.celrep.2015.12.056

Seo, H. S., Kim, H., Hwang, S. M., Hong, S. H., & Lee, I. Y. (2016). Predictors of job satisfaction and burnout among tuberculosis management nurses and physicians. Epidemiol Health, 38. https://doi.org/10.4178/epih.e2016008

Seo, H. S., Kim, H., Hwang, S. M., Hong, S. H., & Lee, I. Y. (2016). Predictors of job satisfaction and burnout among tuberculosis management nurses and physicians. Epidemiol Health, 38. https://doi.org/10.4178/epih.e2016008

Shahmanesh, M., Schultze, A., Burns, F., Kirk, O., Lundgren, J., Mussini, C., … on behalf of EuroSIDA in EuroCOORD. (2016). The cardiovascular risk management for people living with HIV in Europe:  how well are we doing? AIDS, 30(16). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2016/10230/The_cardiovascular_risk_management_for_people.12.aspx

Shahmanesh, M., Schultze, A., Burns, F., Kirk, O., Lundgren, J., Mussini, C., … on behalf of EuroSIDA in EuroCOORD. (2016). The cardiovascular risk management for people living with HIV in Europe:  how well are we doing? AIDS, 30(16). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2016/10230/The_cardiovascular_risk_management_for_people.12.aspx

Simoni, Y., Fehlings, M., Kløverpris, H. N., McGovern, N., Koo, S.-L., Loh, C. Y., … Newell, E. W. (2017). Human Innate Lymphoid Cell Subsets Possess Tissue-Type Based Heterogeneity in Phenotype and Frequency. Immunity, 46(1), 148–161. https://doi.org/10.1016/j.immuni.2016.11.005

Simoni, Y., Fehlings, M., Kløverpris, H. N., McGovern, N., Koo, S.-L., Loh, C. Y., … Newell, E. W. (2017). Human Innate Lymphoid Cell Subsets Possess Tissue-Type Based Heterogeneity in Phenotype and Frequency. Immunity, 46(1), 148–161. https://doi.org/10.1016/j.immuni.2016.11.005

Skovdal, M., Wringe, A., Seeley, J., Renju, J., Paparini, S., Wamoyi, J., … Bonnington, O. (2017). Using theories of practice to understand HIV-positive persons varied engagement with HIV services: a qualitative study in six Sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052977

Skovdal, M., Wringe, A., Seeley, J., Renju, J., Paparini, S., Wamoyi, J., … Bonnington, O. (2017). Using theories of practice to understand HIV-positive persons varied engagement with HIV services: a qualitative study in six Sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052977

Surolia, R., Karki, S., Wang, Z., Kulkarni, T., Li, F. J., Vohra, S., … Antony, V. B. (2016). Attenuated heme oxygenase-1 responses predispose the elderly to pulmonary nontuberculous mycobacterial infections. American Journal of Physiology - Lung Cellular and Molecular Physiology, 311(5), L928–L940. https://doi.org/10.1152/ajplung.00397.2015

Surolia, R., Karki, S., Wang, Z., Kulkarni, T., Li, F. J., Vohra, S., … Antony, V. B. (2016). Attenuated heme oxygenase-1 responses predispose the elderly to pulmonary nontuberculous mycobacterial infections. American Journal of Physiology - Lung Cellular and Molecular Physiology, 311(5), L928–L940. https://doi.org/10.1152/ajplung.00397.2015

Surolia, R., Karki, S., Wang, Z., Kulkarni, T., Li, F. J., Vohra, S., … Antony, V. B. (2016). Attenuated heme oxygenase-1 responses predispose the elderly to pulmonary nontuberculous mycobacterial infections. American Journal of Physiology - Lung Cellular and Molecular Physiology, 311(5), L928–L940. https://doi.org/10.1152/ajplung.00397.2015

Surolia, R., Karki, S., Wang, Z., Kulkarni, T., Li, F. J., Vohra, S., … Antony, V. B. (2016). Attenuated heme oxygenase-1 responses predispose the elderly to pulmonary nontuberculous mycobacterial infections. American Journal of Physiology - Lung Cellular and Molecular Physiology, 311(5), L928–L940. https://doi.org/10.1152/ajplung.00397.2015

Sutherland, K. A., Collier, D. A., Claiborne, D. T., Prince, J. L., Deymier, M. J., Goldstein, R. A., … Gupta, R. K. (2016). Wide variation in susceptibility of transmitted/founder HIV-1 subtype C Isolates to protease inhibitors and association with in vitro replication efficiency. Scientific Reports, 6(1). https://doi.org/10.1038/srep38153

Sutherland, K. A., Collier, D. A., Claiborne, D. T., Prince, J. L., Deymier, M. J., Goldstein, R. A., … Gupta, R. K. (2016). Wide variation in susceptibility of transmitted/founder HIV-1 subtype C Isolates to protease inhibitors and association with in vitro replication efficiency. Scientific Reports, 6(1). https://doi.org/10.1038/srep38153

The EuroCoord-CHAIN-EPPICC joint project study group, Ngo-Giang-Huong, N., Wittkop, L., Judd, A., Reiss, P., Goetghebuer, T., … Lallemant, M. (2016). Prevalence and effect of pre-treatment drug resistance on the virological response to antiretroviral treatment initiated in HIV-infected children – a EuroCoord-CHAIN-EPPICC joint project. BMC Infectious Diseases, 16(1). https://doi.org/10.1186/s12879-016-1968-2

The EuroCoord-CHAIN-EPPICC joint project study group, Ngo-Giang-Huong, N., Wittkop, L., Judd, A., Reiss, P., Goetghebuer, T., … Lallemant, M. (2016). Prevalence and effect of pre-treatment drug resistance on the virological response to antiretroviral treatment initiated in HIV-infected children – a EuroCoord-CHAIN-EPPICC joint project. BMC Infectious Diseases, 16(1). https://doi.org/10.1186/s12879-016-1968-2

Tlou, B., Sartorius, B., & Tanser, F. (2016). Spatial-temporal dynamics and structural determinants of child and maternal mortality in a rural, high HIV burdened South African population, 2000–2014: a study protocol. BMJ Open, 6(7), e010013. https://doi.org/10.1136/bmjopen-2015-010013

Tlou, B., Sartorius, B., & Tanser, F. (2016). Spatial-temporal dynamics and structural determinants of child and maternal mortality in a rural, high HIV burdened South African population, 2000–2014: a study protocol. BMJ Open, 6(7), e010013. https://doi.org/10.1136/bmjopen-2015-010013

Treffry-Goatley, A., Lessells, R., Sykes, P., Bärnighausen, T., de Oliveira, T., Moletsane, R., & Seeley, J. (2016). Understanding Specific Contexts of Antiretroviral Therapy Adherence in Rural South Africa: A Thematic Analysis of Digital Stories from a Community with High HIV Prevalence. PLOS ONE, 11(2), e0148801. https://doi.org/10.1371/journal.pone.0148801

Treffry-Goatley, A., Lessells, R., Sykes, P., Bärnighausen, T., de Oliveira, T., Moletsane, R., & Seeley, J. (2016). Understanding Specific Contexts of Antiretroviral Therapy Adherence in Rural South Africa: A Thematic Analysis of Digital Stories from a Community with High HIV Prevalence. PLOS ONE, 11(2), e0148801. https://doi.org/10.1371/journal.pone.0148801

van Rooyen, H., Essack, Z., Rochat, T., Wight, D., Knight, L., Bland, R., & Celum, C. (2016). Taking HIV Testing to Families: Designing a Family-Based Intervention to Facilitate HIV Testing, Disclosure, and Intergenerational Communication. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00154

van Rooyen, H., Essack, Z., Rochat, T., Wight, D., Knight, L., Bland, R., & Celum, C. (2016). Taking HIV Testing to Families: Designing a Family-Based Intervention to Facilitate HIV Testing, Disclosure, and Intergenerational Communication. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00154

van Rooyen, H., Essack, Z., Rochat, T., Wight, D., Knight, L., Bland, R., & Celum, C. (2016). Taking HIV Testing to Families: Designing a Family-Based Intervention to Facilitate HIV Testing, Disclosure, and Intergenerational Communication. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00154

van Rooyen, H., Essack, Z., Rochat, T., Wight, D., Knight, L., Bland, R., & Celum, C. (2016). Taking HIV Testing to Families: Designing a Family-Based Intervention to Facilitate HIV Testing, Disclosure, and Intergenerational Communication. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00154

Vandormael, A. M., Boulware, D. R., Tanser, F. C., Bärnighausen, T. W., Stott, K. E., & de Oliveira, T. (2016). Brief Report: Virologic Monitoring Can Be a Cost-Effective Strategy to Diagnose Treatment Failure on First-Line ART. Journal of Acquired Immune Deficiency Syndromes (1999), 71(4), 462–466. https://doi.org/10.1097/QAI.0000000000000870

Vandormael, A. M., Boulware, D. R., Tanser, F. C., Bärnighausen, T. W., Stott, K. E., & de Oliveira, T. (2016). Brief Report: Virologic Monitoring Can Be a Cost-Effective Strategy to Diagnose Treatment Failure on First-Line ART. Journal of Acquired Immune Deficiency Syndromes (1999), 71(4), 462–466. https://doi.org/10.1097/QAI.0000000000000870

Vandormael, A. M., Boulware, D. R., Tanser, F. C., Bärnighausen, T. W., Stott, K. E., & de Oliveira, T. (2016). Brief Report: Virologic Monitoring Can Be a Cost-Effective Strategy to Diagnose Treatment Failure on First-Line ART. Journal of Acquired Immune Deficiency Syndromes (1999), 71(4), 462–466. https://doi.org/10.1097/QAI.0000000000000870

Vandormael, A. M., Boulware, D. R., Tanser, F. C., Bärnighausen, T. W., Stott, K. E., & de Oliveira, T. (2016). Brief Report: Virologic Monitoring Can Be a Cost-Effective Strategy to Diagnose Treatment Failure on First-Line ART. Journal of Acquired Immune Deficiency Syndromes (1999), 71(4), 462–466. https://doi.org/10.1097/QAI.0000000000000870

Wamoyi, J., Renju, J., Moshabela, M., McLean, E., Nyato, D., Mbata, D., … Wringe, A. (2017). Understanding the relationship between couple dynamics and engagement with HIV care services: insights from a qualitative study in Eastern and Southern Africa. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052976

Wamoyi, J., Renju, J., Moshabela, M., McLean, E., Nyato, D., Mbata, D., … Wringe, A. (2017). Understanding the relationship between couple dynamics and engagement with HIV care services: insights from a qualitative study in Eastern and Southern Africa. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052976

Wang, H., Bhutta, Z. A., Coates, M. M., Coggeshall, M., Dandona, L., Diallo, K., … Murray, C. J. L. (2016). Global, regional, national, and selected subnational levels of stillbirths, neonatal, infant, and under-5 mortality, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1725–1774. https://doi.org/10.1016/S0140-6736(16)31575-6

Wang, H., Bhutta, Z. A., Coates, M. M., Coggeshall, M., Dandona, L., Diallo, K., … Murray, C. J. L. (2016). Global, regional, national, and selected subnational levels of stillbirths, neonatal, infant, and under-5 mortality, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1725–1774. https://doi.org/10.1016/S0140-6736(16)31575-6

Wang, H., Naghavi, M., Allen, C., Barber, R. M., Bhutta, Z. A., Carter, A., … Murray, C. J. L. (2016). Global, regional, and national life expectancy, all-cause mortality, and cause-specific mortality for 249 causes of death, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1459–1544. https://doi.org/10.1016/S0140-6736(16)31012-1

Wang, H., Naghavi, M., Allen, C., Barber, R. M., Bhutta, Z. A., Carter, A., … Murray, C. J. L. (2016). Global, regional, and national life expectancy, all-cause mortality, and cause-specific mortality for 249 causes of death, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1459–1544. https://doi.org/10.1016/S0140-6736(16)31012-1

Wang, H., Wolock, T. M., Carter, A., Nguyen, G., Kyu, H. H., Gakidou, E., … Murray, C. J. L. (2016). Estimates of global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2015: the Global Burden of Disease Study 2015. The Lancet HIV, 3(8), e361–e387. https://doi.org/10.1016/S2352-3018(16)30087-X

Wang, H., Wolock, T. M., Carter, A., Nguyen, G., Kyu, H. H., Gakidou, E., … Murray, C. J. L. (2016). Estimates of global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2015: the Global Burden of Disease Study 2015. The Lancet HIV, 3(8), e361–e387. https://doi.org/10.1016/S2352-3018(16)30087-X

Watters, S. A., Mlcochova, P., Maldarelli, F., Goonetilleke, N., Pillay, D., & Gupta, R. K. (2016). Sequential CCR5-Tropic HIV-1 Reactivation from Distinct Cellular Reservoirs following Perturbation of Elite Control. PLOS ONE, 11(7), e0158854. https://doi.org/10.1371/journal.pone.0158854

Watters, S. A., Mlcochova, P., Maldarelli, F., Goonetilleke, N., Pillay, D., & Gupta, R. K. (2016). Sequential CCR5-Tropic HIV-1 Reactivation from Distinct Cellular Reservoirs following Perturbation of Elite Control. PLOS ONE, 11(7), e0158854. https://doi.org/10.1371/journal.pone.0158854

White, E., Smit, E., Churchill, D., Collins, S., Booth, C., Tostevin, A., … Dunn, D. T. (2016). No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom. Journal of Infectious Diseases, 214(9), 1302–1308. https://doi.org/10.1093/infdis/jiw213

White, E., Smit, E., Churchill, D., Collins, S., Booth, C., Tostevin, A., … Dunn, D. T. (2016). No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom. Journal of Infectious Diseases, 214(9), 1302–1308. https://doi.org/10.1093/infdis/jiw213

White, E., Smit, E., Churchill, D., Collins, S., Booth, C., Tostevin, A., … Dunn, D. T. (2016). No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom. Journal of Infectious Diseases, 214(9), 1302–1308. https://doi.org/10.1093/infdis/jiw213

White, E., Smit, E., Churchill, D., Collins, S., Booth, C., Tostevin, A., … Dunn, D. T. (2016). No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom. Journal of Infectious Diseases, 214(9), 1302–1308. https://doi.org/10.1093/infdis/jiw213

Wringe, A., Moshabela, M., Nyamukapa, C., Bukenya, D., Ondenge, K., Ddaaki, W., … Renju, J. (2017). HIV testing experiences and their implications for patient engagement with HIV care and treatment on the eve of ‘test and treat’: findings from a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052969. https://doi.org/10.1136/sextrans-2016-052969

Wringe, A., Moshabela, M., Nyamukapa, C., Bukenya, D., Ondenge, K., Ddaaki, W., … Renju, J. (2017). HIV testing experiences and their implications for patient engagement with HIV care and treatment on the eve of ‘test and treat’: findings from a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052969. https://doi.org/10.1136/sextrans-2016-052969

 Yates, T. A., Tanser, F., & Abubakar, I. (2016). Plan Beta for tuberculosis: it’s time to think seriously about poorly ventilated congregate settings. The International Journal of Tuberculosis and Lung Disease, 20(1), 5–10. https://doi.org/10.5588/ijtld.15.0494

 Yates, T. A., Tanser, F., & Abubakar, I. (2016). Plan Beta for tuberculosis: it’s time to think seriously about poorly ventilated congregate settings. The International Journal of Tuberculosis and Lung Disease, 20(1), 5–10. https://doi.org/10.5588/ijtld.15.0494

Zuma, T., Wight, D., Rochat, T., & Moshabela, M. (2016). The role of traditional health practitioners in Rural KwaZulu-Natal, South Africa: generic or mode specific? BMC Complementary and Alternative Medicine16(1). https://doi.org/10.1186/s12906-016-1293-8

Zuma, T., Wight, D., Rochat, T., & Moshabela, M. (2016). The role of traditional health practitioners in Rural KwaZulu-Natal, South Africa: generic or mode specific? BMC Complementary and Alternative Medicine16(1). https://doi.org/10.1186/s12906-016-1293-8