Publications

2018 Publications

Birdthistle, I., Schaffnit, S. B., Kwaro, D., Shahmanesh, M., Ziraba, A., Kabiru, C. W., … Floyd, S. (2018). Evaluating the impact of the DREAMS partnership to reduce HIV incidence among adolescent girls and young women in four settings: a study protocol. BMC Public Health, 18(1).https://doi.org/10.1186/s12889-018-5789-7 https://doi.org/10.1186/s12889-018-5789-7

Ahmed, S., Autrey, J., Katz, I. T., Fox, M. P., Rosen, S., Onoya, D., … Bor, J. (2018). Why do people living with HIV not initiate treatment? A systematic review of qualitative evidence from low- and middle-income countries. Social Science & Medicine. https://doi.org/10.1016/j.socscimed.2018.05.048

Baiyegunhi, O., Ndlovu, B., Ogunshola, F., Ismail, N., Walker, B. D., Ndung’u, T., & Ndhlovu, Z. M. (2018). Frequencies of circulating Th1-biased T follicular helper cells in acute HIV-1 infection correlate with the development of HIV-specific antibody responses and lower set point viral load. Journal of Virology, JVI.00659-18. https://doi.org/10.1128/JVI.00659-18

Bommer, C., Sagalova, V., Heesemann, E., Manne-Goehler, J., Atun, R., Bärnighausen, T., … Vollmer, S. (2018). Global Economic Burden of Diabetes in Adults: Projections From 2015 to 2030. Diabetes Care, dc171962. https://doi.org/10.2337/dc17-1962

Brennan, A. T., Bor, J., Davies, M.-A., Wandeler, G., Prozesky, H., Fatti, G., … Fox, M. P. (2018). Drug Side Effects and Retention on HIV Treatment: a Regression Discontinuity Study of Tenofovir Implementation in South Africa and Zambia. American Journal of Epidemiology. https://doi.org/10.1093/aje/kwy093

Camlin, C. S., Cassels, S., & Seeley, J. (2018). Bringing population mobility into focus to achieve HIV prevention goals. Journal of the International AIDS Society, 21(S4), e25136. https://doi.org/10.1002/jia2.25136

Chang, S. T., Chihota, V. N., Fielding, K. L., Grant, A. D., Houben, R. M., White, R. G., … Wagner, B. G. (2018). Small contribution of gold mines to the ongoing tuberculosis epidemic in South Africa: a modeling-based study. BMC Medicine, 16(1). https://doi.org/10.1186/s12913-018-3404-3

Chung, A., Makuba, J. M., Ndlovu, B., Licht, A., Robinson, H., Ramlakhan, Y., … Alter, G. (2018). Viral control in chronic HIV-1 subtype C infection is associated with enrichment of p24 IgG1 with Fc effector activity: AIDS, 1. https://doi.org/10.1097/QAD.0000000000001812

Chetty, T., Yapa, H. M. N., Herbst, C., Geldsetzer, P., Naidu, K. K., … Bärnighausen, T. (2018). The MONARCH intervention to enhance the quality of antenatal and postnatal primary health services in rural South Africa: protocol for a stepped-wedge cluster-randomised controlled trial. BMC Health Services Research, 18(1). https://doi.org/10.1186/s12913-018-3404-3

Deiner, M. S., Keenan, J. D., Diarra, A., Sié, A., Zongo, A., Millogo, O., … Chodosh, J. (2018). Seasonal and Temporal Trends in Childhood Conjunctivitis in Burkina Faso. The American Journal of Tropical Medicine and Hygiene. https://doi.org/10.4269/ajtmh.17-0642

Dong, K. L., Moodley, A., Kwon, D. S., Ghebremichael, M. S., Dong, M., Ismail, N., … Ndung’u, T. (2018). Detection and treatment of Fiebig stage I HIV-1 infection in young at-risk women in South Africa: a prospective cohort study. The Lancet HIV, 5(1), e35–e44. https://doi.org/10.1016/S2352-3018(17)30146-7

Dzomba, A., Govender, K., Mashamba-Thompson, T. P., & Tanser, F. (2018). Mobility and increased risk of HIV acquisition in South Africa: a mixed-method systematic review protocol. Systematic Reviews, 7(1). https://doi.org/10.1186/s13643-018-0703-z

Ekoru, K., Young, E. H., Dillon, D. G., Gurdasani, D., Stehouwer, N., Faurholt-Jepsen, D., … Sandhu, M. S. (2018). HIV treatment is associated with a twofold higher probability of raised triglycerides: pooled analyses in 21 023 individuals in sub-Saharan Africa. Global Health, Epidemiology and Genomics, 3. https://doi.org/10.1017/gheg.2018.7

Francis, S. C., Mthiyane, T. N., Baisley, K., Mchunu, S. L., Ferguson, J. B., Smit, T., … Shahmanesh, M. (2018). Prevalence of sexually transmitted infections among young people in South Africa: A nested survey in a health and demographic surveillance site. PLOS Medicine15(2), e1002512. https://doi.org/10.1371/journal.pmed.1002512

Geldsetzer, P., Manne-Goehler, J., Theilmann, M., Davies, J. I., Awasthi, A., Vollmer, S., … Atun, R. (2018). Diabetes and Hypertension in India: A Nationally Representative Study of 1.3 Million Adults. JAMA Internal Medicine. https://doi.org/10.1001/jamainternmed.2017.8094

Haber, N., Harling, G., Cohen, J., Mutevedzi, T., Tanser, F., Gareta, D., … Fink, G. (2018). List randomization for eliciting HIV status and sexual behaviors in rural KwaZulu-Natal, South Africa: a randomized experiment using known true values for validation. BMC Medical Research Methodology, 18(1). https://doi.org/10.1186/s12874-018-0507-9

Hontelez, J. A. C., Bor, J., Tanser, F. C., Pillay, D., Moshabela, M., & Bärnighausen, T. (2018). HIV Treatment Substantially Decreases Hospitalization Rates: Evidence From Rural South Africa. Health Affairs, 37(6), 997–1004. https://doi.org/10.1377/hlthaff.2017.0820

Iwuji, C., McGrath, N., Calmy, A., Dabis, F., Pillay, D., Newell, M.-L., … Porter, K. (2018). Universal test and treat is not associated with sub-optimal antiretroviral therapy adherence in rural South Africa: the ANRS 12249 TasP trial. Journal of the International AIDS Society, 21(6), e25112. https://doi.org/10.1002/jia2.25112

Liu, Y., Ndumnego, O., Chen, T., Kim, R., Jenny-Avital, E., Ndung’u, T., … Achkar, J. (2018). Soluble CD14 as a Diagnostic Biomarker for Smear-Negative HIV-Associated Tuberculosis. Pathogens, 7(1), 26. https://doi.org/10.3390/pathogens7010026

Maraba, N., Chihota, V., McCarthy, K., Churchyard, G. J., & Grant, A. D. (2018). Linkage to care among adults being investigated for tuberculosis in South Africa: pilot study of a case manager intervention. BMJ Open, 8(5), e021111. https://doi.org/10.1136/bmjopen-2017-021111

Meyer-Rath, G., McGillen, J. B., Cuadros, D. F., Hallett, T. B., Bhatt, S., Wabiri, N., … Rehle, T. (2018). Targeting the right interventions to the right people and places: the role of geospatial analysis in HIV programme planning. AIDS, 1. https://doi.org/10.1097/QAD.0000000000001792

Moazen, B., Saeedi Moghaddam, S., Silbernagl, M. A., Lotfizadeh, M., Bosworth, R. J., Alammehrjerdi, Z., … Dolan, K. A. (2018). Prevalence of Drug Injection, Sexual Activity, Tattooing, and Piercing Among Prison Inmates. Epidemiologic Reviews, mxy002–mxy002. https://doi.org/10.1093/epirev/mxy002

McCarthy, K., Fielding, K., Churchyard, G. J., & Grant, A. D. (2018). Empiric tuberculosis treatment in South African primary health care facilities - for whom, where, when and why: Implications for the development of tuberculosis diagnostic tests. PLOS ONE, 13(1), e0191608. https://doi.org/10.1371/journal.pone.0191608

Naidoo, N., Pillay, B., Bubb, M., Pym, A., Chiliza, T., Naidoo, K., … Pillay, M. (2018). Evaluation of a synthetic peptide for the detection of anti- Mycobacterium tuberculosis curli pili IgG antibodies in patients with pulmonary tuberculosis. Tuberculosis, 109, 80–84. https://doi.org/10.1016/j.tube.2018.01.007

Ngwenya, N., Gumede, D., Shahmanesh, M., McGrath, N., Grant, A., & Seeley, J. (2018). Community perceptions of the socio-economic structural context influencing HIV and TB risk, prevention and treatment in a high prevalence area in the era of antiretroviral therapy. African Journal of AIDS Research, 17(1), 72–81. https://doi.org/10.2989/16085906.2017.1415214

Oldenburg, C. E., Bor, J., Harling, G., Tanser, F., Mutevedzi, T., Shahmanesh, M., … Bärnighausen, T. (2018). Impact of early antiretroviral therapy eligibility on HIV acquisition: Household-level evidence from rural South Africa. AIDS, 1. https://doi.org/10.1097/QAD.0000000000001737

Pacl, H. T., Reddy, V. P., Saini, V., Chinta, K. C., & Steyn, A. J. (2018). Host-pathogen redox dynamics modulate Mycobacterium tuberculosis pathogenesis. Pathogens and Disease. https://doi.org/10.1093/femspd/fty036

Perriat, D., Balzer, L., Hayes, R., Lockman, S., Walsh, F., Ayles, H., … the Universal Test and Treat Trials Consortium (UT3C). (2018). Comparative assessment of five trials of universal HIV testing and treatment in sub-Saharan Africa. Journal of the International AIDS Society, 21(1), e25048. https://doi.org/10.1002/jia2.25048

Ramsuran, V., Naranbhai, V., Horowitz, A., Qi, Y., Martin, M. P., Yuki, Y., … Carrington, M. (2018). Elevated HLA-A expression impairs HIV control through inhibition of NKG2A-expressing cells. Science, 359(6371), 86–90. https://doi.org/10.1126/science.aam8825

Ray, P. C., Bayliss, T., Prosser, G. A., Harrison, J. R., Green, K., Soares de Melo, C., … Boshoff, H. I. M. (2018). 2-Mercapto-quinazolinones as inhibitors of NDH-2 and Mycobacterium tuberculosis: Structure-activity relationships, mechanism of action and ADME characterization. ACS Infectious Diseases. https://doi.org/10.1021/acsinfecdis.7b00275

Reddy, V. P., Chinta, K. C., Saini, V., Glasgow, J. N., Hull, T. D., Traylor, A., … Steyn, A. J. C. (2018). Ferritin H Deficiency in Myeloid Compartments Dysregulates Host Energy Metabolism and Increases Susceptibility to Mycobacterium tuberculosis Infection. Frontiers in Immunology, 9. https://doi.org/10.3389/fimmu.2018.00860

Rickman, H. M., Miller, R. F., Morris-Jones, S., Kellgren, L., Edwards, S. G., & Grant, A. D. (2018). Missed opportunities for tuberculosis prevention among patients accessing a UK HIV service. International Journal of STD & AIDS, 095646241877301. https://doi.org/10.1177/0956462418773010

Seipone, I. D., Singh, R., Patel, V. B., Singh, A., Gordon, M. L., Muema, D. M., … Ndung’u, T. (2018). Tuberculous meningitis is associated with higher cerebrospinal HIV-1 viral loads compared to other HIV-1-associated meningitides. PLOS ONE, 13(2), e0192060. https://doi.org/10.1371/journal.pone.0192060

Smith, C. M., Lessells, R., Grant, A. D., Herbst, K., & Tanser, F. (2018). Spatial clustering of drug-resistant tuberculosis in Hlabisa subdistrict, KwaZulu-Natal, 2011–2015. The International Journal of Tuberculosis and Lung Disease22(3), 287–293. https://doi.org/10.5588/ijtld.17.0457

Tanser, F., Azongo, D. K., Vandormael, A., Bärnighausen, T., & Appleton, C. (2018). Impact of the scale-up of piped water on urogenital schistosomiasis infection in rural South Africa. ELife, 7, e33065. https://doi.org/10.7554/eLife.33065

Wang, Z., Cumming, B. M., Mao, C., Zhu, Y., Lu, P., Steyn, A. J. C., … Hu, Y. (2018). RbpA and σ B association regulates polyphosphate levels to modulate mycobacterial isoniazid-tolerance: RbpA and σ B associate to regulate INH-tolerance. Molecular Microbiology. https://doi.org/10.1111/mmi.13952

2017 Publications

Brennan, A. T., Davies, M.-A., Bor, J., Wandeler, G., Stinson, K., Wood, R., … Fox, M. P. (2017). Has the phasing out of stavudine in accordance with changes in WHO guidelines led to a decrease in single-drug substitutions in first-line antiretroviral therapy for HIV in sub-Saharan Africa? AIDS, 31(1). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2017/01020/Has_the_phasing_out_of_stavudine_in_accordance.16.aspx

Bukenya, D., Wringe, A., Moshabela, M., Skovdal, M., Ssekubugu, R., Paparini, S., … Seeley, J. (2017). Where are we now? A multicountry qualitative study to explore access to pre-antiretroviral care services: a precursor to antiretroviral therapy initiation. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052970

Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., Kamungoma, N., … Oldenburg, C. E. (2017). HIV self-testing among female sex workers in Zambia: A cluster randomized controlled trial. PLOS Medicine, 14(11), e1002442. https://doi.org/10.1371/journal.pmed.1002442

Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., Kamungoma, N., … Oldenburg, C. E. (2017). Contraceptive use and unplanned pregnancy among female sex workers in Zambia. Contraception, 96(3), 196–202. https://doi.org/10.1016/j.contraception.2017.07.003

Chang, C. C., Kangethe, R., Omarjee, S., Hiramen, K., Gosnell, B., Sojane, K., … Ndung’u, T. (2017). Relationship of Human Immunodeficiency Virus Viral Load in Cerebrospinal Fluid and Plasma in Patients Co-infected With Cryptococcal Meningitis. Open Forum Infectious Diseases, 4(2). https://doi.org/10.1093/ofid/ofx032

Collier, D., Iwuji, C., Derache, A., de Oliveira, T., Okesola, N., Calmy, A., … Gupta, R. K. (2017). Virological Outcomes of Second-line Protease Inhibitor–Based Treatment for Human Immunodeficiency Virus Type 1 in a High-Prevalence Rural South African Setting: A Competing-Risks Prospective Cohort Analysis. Clinical Infectious Diseases, 64(8), 1006–1016. https://doi.org/10.1093/cid/cix015

Cordes, J. L., Stangl, A., Krishnaratne, S., Hoddinott, G., Mathema, H., Bond, V., … Hargreaves, J. R. (2017). Trends in Responses to DHS Questions Should Not Be Interpreted as Reflecting an Increase in “Anticipated Stigma” in Africa: JAIDS Journal of Acquired Immune Deficiency Syndromes, 75(1), e22–e23. https://doi.org/10.1097/QAI.0000000000001328

Cornell, M., Johnson, L. F., Wood, R., Tanser, F., Fox, M. P., Prozesky, H., … Boulle, A. (2017). Twelve-year mortality in adults initiating antiretroviral therapy in South Africa. Journal of the International AIDS Society, 20(1). https://doi.org/10.7448/IAS.20.1.21902

Cox, H., Dickson-Hall, L., Ndjeka, N., van’t Hoog, A., Grant, A., Cobelens, F., … Nicol, M. (2017). Delays and loss to follow-up before treatment of drug-resistant tuberculosis following implementation of Xpert MTB/RIF in South Africa: A retrospective cohort study. PLOS Medicine, 14(2), e1002238. https://doi.org/10.1371/journal.pmed.1002238

Cuadros, D. F., Li, J., Branscum, A. J., Akullian, A., Jia, P., Mziray, E. N., & Tanser, F. (2017). Mapping the spatial variability of HIV infection in Sub-Saharan Africa: Effective information for localized HIV prevention and control. Scientific Reports, 7(1), 9093. https://doi.org/10.1038/s41598-017-09464-y

Cumming, B. M., Chinta, K. C., Reddy, V. P., & Steyn, A. J. C. (2017). Role of Ergothioneine in Microbial Physiology and Pathogenesis. Antioxidants & Redox Signaling. https://doi.org/10.1089/ars.2017.7300

Cumming, B. M., Rahman, M. A., Lamprecht, D. A., Rohde, K. H., Saini, V., Adamson, J. H., … Steyn, A. J. C. (2017). Mycobacterium tuberculosis arrests host cycle at the G1/S transition to establish long term infection. PLOS Pathogens, 13(5), e1006389. https://doi.org/10.1371/journal.ppat.1006389

De Neve, J.-W., & Harling, G. (2017). Offspring schooling associated with increased parental survival in rural KwaZulu-Natal, South Africa. Social Science & Medicine, 176, 149–157. https://doi.org/10.1016/j.socscimed.2017.01.015

de Welzen, L., Eldholm, V., Maharaj, K., Manson, A. L., Earl, A. M., & Pym, A. S. (2017). Whole transcriptome and genomic analysis of extensively drug-resistant Mycobacterium tuberculosis clinical isolates identifies downregulation of ethA as a mechanism of ethionamide resistance. Antimicrobial Agents and Chemotherapyhttps://doi.org/10.1128/AAC.01461-17

Dobra, A., Bärnighausen, T., Vandormael, A., & Tanser, F. (2017). Space-time migration patterns and risk of HIV acquisition in rural South Africa. AIDS (London, England), 31(1), 137–145. https://doi.org/10.1097/QAD.0000000000001292

Dong, K. L., Moodley, A., Kwon, D. S., Ghebremichael, M. S., Dong, M., Ismail, N., … Ndung’u, T. (n.d.). Detection and treatment of Fiebig stage I HIV-1 infection in young at-risk women in South Africa: a prospective cohort study. The Lancet HIVhttps://doi.org/10.1016/S2352-3018(17)30146-7

Dowdy, D. W., Grant, A. D., Dheda, K., Nardell, E., Fielding, K., & Moore, D. A. J. (2017). Designing and Evaluating Interventions to Halt the Transmission of Tuberculosis. The Journal of Infectious Diseases216(suppl_6), S654–S661. https://doi.org/10.1093/infdis/jix320 

Garrett, N. J., McGrath, N., & Mindel, A. (2017). Advancing STI care in low/middle-income countries: has STI syndromic management reached its use-by date? Sexually Transmitted Infections, 93(1), 4. https://doi.org/10.1136/sextrans-2016-052581

Gatuguta, A., Katusiime, B., Seeley, J., Colombini, M., Mwanzo, I., & Devries, K. (2017). Should community health workers offer support healthcare services to survivors of sexual violence? a systematic review. BMC International Health and Human Rights, 17(1), 28. https://doi.org/10.1186/s12914-017-0137-z

Geldsetzer, P., De Neve, J.-W., Boudreaux, C., Bärnighausen, T., & Bossert, T. J. (2017). Improving the performance of community health workers in Swaziland: findings from a qualitative study. Human Resources for Health, 15(1), 68. https://doi.org/10.1186/s12960-017-0236-x

Geldsetzer, P., Feigl, A. B., Tanser, F., Gareta, D., Pillay, D., & Bärnighausen, T. (2017). Population-level decline in BMI and systolic blood pressure following mass HIV treatment: Evidence from rural KwaZulu-Natal: Decline in BMI and BP following Mass HIV Treatment. Obesity, 25(1), 200–206. https://doi.org/10.1002/oby.21663

Godfrey, C., Thigpen, M. C., Crawford, K. W., Jean-Phillippe, P., Pillay, D., Persaud, D., … Fitzgibbon, J. (2017). Global HIV Antiretroviral Drug Resistance. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jix137

Goodall, R. L., Dunn, D. T., Nkurunziza, P., Mugarura, L., Pattery, T., Munderi, P., … Gupta, R. K. (2017). Rapid accumulation of HIV-1 thymidine analogue mutations and phenotypic impact following prolonged viral failure on zidovudine-based first-line ART in sub-Saharan Africa. Journal of Antimicrobial Chemotherapy, 72(5), 1450–1455. https://doi.org/10.1093/jac/dkw583

Aicken, C. R. H., Sutcliffe, L. J., Gibbs, J., Tickle, L. J., Hone, K., Harding-Esch, E. M., … Shahmanesh, M. (2017). Using the eSexual Health Clinic to access chlamydia treatment and care via the internet: a qualitative interview study. Sexually Transmitted Infections. https://doi.org/10.1136/sextrans-2017-053227

Gounder, K., Oyaro, M., Padayachi, N., Zulu, T. M., de Oliveira, T., Wylie, J., & Ndung’u, T. (2017). Complex Subtype Diversity of HIV-1 Among Drug Users in Major Kenyan Cities. AIDS Research and Human Retroviruses, 33(5), 500–510. https://doi.org/10.1089/aid.2016.0321

Akilimali, N. A., Chang, C. C., Muema, D. M., Reddy, T., Moosa, M.-Y. S., Lewin, S. R., … Ndung’u, T. (2017). Plasma But Not Cerebrospinal Fluid Interleukin 7 and Interleukin 5 Levels Pre–Antiretroviral Therapy Commencement Predict Cryptococcosis-Associated Immune Reconstitution Inflammatory Syndrome. Clinical Infectious Diseases, 65(9), 1551–1559. https://doi.org/10.1093/cid/cix598

Gupta, R. K., Gregson, J., Parkin, N., Haile-Selassie, H., Tanuri, A., Andrade Forero, L., … Bertagnolio, S. (2017). HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression analysis. The Lancet Infectious Diseases. https://doi.org/10.1016/S1473-3099(17)30702-8 

Akullian, A., Bershteyn, A., Klein, D., Vandormael, A., Bärnighausen, T., & Tanser, F. (2017). Sexual partnership age pairings and risk of HIV acquisition in rural South Africa: AIDS, 31(12), 1755–1764. https://doi.org/10.1097/QAD.0000000000001553

Haber, N., Tanser, F., Bor, J., Naidu, K., Mutevedzi, T., Herbst, K., … Bärnighausen, T. (2017). From HIV infection to therapeutic response: a population-based longitudinal HIV cascade-of-care study in KwaZulu-Natal, South Africa. The Lancet HIV, 4(5), e223–e230. https://doi.org/10.1016/S2352-3018(16)30224-7

Atun, R., Chang, A. Y., Ogbuoji, O., Silva, S., Resch, S., Hontelez, J., & Bärnighausen, T. (2016). Long-term financing needs for HIV control in sub-Saharan Africa in 2015–2050: a modelling study. BMJ Open, 6(3). https://doi.org/10.1136/bmjopen-2015-009656

Hainsworth, E. G., Shahmanesh, M., & Stevenson, F. (2017). Exploring the views and experiences of HIV positive patients treated for cancer: a systematic review of the literature. AIDS Care, 1–9. https://doi.org/10.1080/09540121.2017.1381332

Baijnath, S., Moodley, C., Ngcobo, B., Singh, S. D., Kruger, H. G., Arvidsson, P. I., … Govender, T. (2017). Clofazimine protects against mycobacterium tuberculosis dissemination in the CNS following an aerosol challenge in a murine model. International Journal of Antimicrobial Agents. https://doi.org/10.1016/j.ijantimicag.2017.08.020

Hanifa, Y., Fielding, K. L., Chihota, V. N., Adonis, L., Charalambous, S., Foster, N., … Grant, A. D. (2017). A clinical scoring system to prioritise investigation for tuberculosis among adults attending HIV clinics in South Africa. PLOS ONE, 12(8), e0181519. https://doi.org/10.1371/journal.pone.0181519

Barichievy, S., Naidoo, J., Boulle, M., Scholefield, J., Parihar, S. P., Coussens, A. K., … Mhlanga, M. M. (2017). Viral apoptosis evasion via the MAPK pathway by use of a host long noncoding RNA. https://doi.org/10.1101/153130

Harling, G., Gumede, D., Mutevedzi, T., McGrath, N., Seeley, J., Pillay, D., … Herbst, A. J. (2017). The impact of self-interviews on response patterns for sensitive topics: a randomized trial of electronic delivery methods for a sexual behaviour questionnaire in rural South Africa. BMC Medical Research Methodology, 17(1), 125. https://doi.org/10.1186/s12874-017-0403-8

Bärnighausen, T. (2017). Population health intervention research: three important advancements. International Journal of Public Health. https://doi.org/10.1007/s00038-017-0985-2

 Harling, G., McGrath, N., Seeley, J., BBrnighausen, T. W., & Herbst, A. J. (2017). The Advantages and Disadvantages of Self-Interviews for Sensitive Topics: A Randomized Trial of Electronic Delivery Methods for a Sexual Behaviour Questionnaire in Rural South Africa. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.2945424

Bernays, S., Bukenya, D., Thompson, C., Ssembajja, F., & Seeley, J. (2017). Being an ‘adolescent’: The consequences of gendered risks for young people in rural Uganda. Childhood, 0907568217732119. https://doi.org/10.1177/0907568217732119

Harvala, H., Frampton, D., Grant, P., Raffle, J., Ferns, R. B., Kozlakidis, Z., … For the ICONIC Consortium. (2017). Emergence of a novel subclade of influenza A(H3N2) virus in London, December 2016 to January 2017. Eurosurveillance, 22(8). https://doi.org/10.2807/1560-7917.ES.2017.22.8.30466

Bhattacharya, D., Danaviah, S., Muema, D. M., Akilimali, N. A., Moodley, P., Ndung’u, T., & Das, G. (2017). Cellular Architecture of Spinal Granulomas and the Immunological Response in Tuberculosis Patients Coinfected with HIV. Frontiers in Immunology, 8, 1120. https://doi.org/10.3389/fimmu.2017.01120

Helova, A., Akama, E., Bukusi, E. A., Musoke, P., Nalwa, W. Z., Odeny, T. A., … Abuogi, L. L. (2017). Health facility challenges to the provision of Option B+ in western Kenya: a qualitative study. Health Policy Plan, 32.

Bohlius, J. (2017). Comparison of Kaposi sarcoma risk in HIV-positive adults across five continents: a multiregional multicohort study. Clinical Infectious Diseases. https://doi.org/10.1093/cid/cix480

Iwuji, C. C., Orne-Gliemann, J., Larmarange, J., Balestre, E., Thiebaut, R., Tanser, F., … Rekacewicz, C. (2017). Universal test and treat and the HIV epidemic in rural South Africa: a phase 4, open-label, community cluster randomised trial. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30205-9

 

Bor, J., Fox, M. P., Rosen, S., Venkataramani, A., Tanser, F., Pillay, D., & Bärnighausen, T. (2017). Treatment eligibility and retention in clinical HIV care: A regression discontinuity study in South Africa. PLOS Medicine, 14(11), e1002463. https://doi.org/10.1371/journal.pmed.1002463 

Jackson, L., Hunter, J., Cele, S., Ferreira, I. M., Young, A., Karim, F., … Sigal, A. (2017). Incomplete inhibition of HIV infection results in more HIV infected lymph node cells by reducing cell death. https://doi.org/10.1101/163352

Bor, J., Ahmed, S., Fox, M. P., Rosen, S., Meyer-Rath, G., Katz, I. T., … Bärnighausen, T. (2017). Effect of eliminating CD4-count thresholds on HIV treatment initiation in South Africa: An empirical modeling study. PLOS ONE, 12(6), e0178249. https://doi.org/10.1371/journal.pone.0178249

Jardim, T. V., Reiger, S., Abrahams-Gessel, S., Gomez-Olive, F. X., Wagner, R. G., Wade, A., … Gaziano, T. A. (2017). Hypertension management in a population of older adults in rural South Africa: Journal of Hypertension, 35(6), 1283–1289. https://doi.org/10.1097/HJH.0000000000001312

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Karat, A. S., Tlali, M., Fielding, K. L., Charalambous, S., Chihota, V. N., Churchyard, G. J., … Grant, A. D. (2017). Measuring mortality due to HIV-associated tuberculosis among adults in South Africa: Comparing verbal autopsy, minimally-invasive autopsy, and research data. PLOS ONE, 12(3), e0174097. https://doi.org/10.1371/journal.pone.0174097

Brennan, A. T., Davies, M.-A., Bor, J., Wandeler, G., Stinson, K., Wood, R., … Fox, M. P. (2017). Has the phasing out of stavudine in accordance with changes in WHO guidelines led to a decrease in single-drug substitutions in first-line antiretroviral therapy for HIV in sub-Saharan Africa? AIDS, 31(1). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2017/01020/Has_the_phasing_out_of_stavudine_in_accordance.16.aspx

Kaufmann, S. H. E., Dockrell, H. M., Drager, N., Ho, M. M., McShane, H., Neyrolles, O., … Hogarth, P. (2017). TBVAC2020: Advancing Tuberculosis Vaccines from Discovery to Clinical Development. Frontiers in Immunology, 8, 1203. https://doi.org/10.3389/fimmu.2017.01203

Bukenya, D., Wringe, A., Moshabela, M., Skovdal, M., Ssekubugu, R., Paparini, S., … Seeley, J. (2017). Where are we now? A multicountry qualitative study to explore access to pre-antiretroviral care services: a precursor to antiretroviral therapy initiation. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052970

Khatamzas, E., Hipp, M. M., Gaughan, D., Pichulik, T., Leslie, A., Fernandes, R. A., … Simmons, A. (2017). Snapin promotes HIV?1 transmission from dendritic cells by dampening TLR8 signaling. The EMBO Journal, 36(20), 2998. https://doi.org/10.15252/embj.201695364

Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., Kamungoma, N., … Oldenburg, C. E. (2017). HIV self-testing among female sex workers in Zambia: A cluster randomized controlled trial. PLOS Medicine, 14(11), e1002442. https://doi.org/10.1371/journal.pmed.1002442

Kiguoya, M. W., Mann, J. K., Chopera, D., Gounder, K., Lee, G. Q., Hunt, P. W., … Ndung’u, T. (2017). Subtype-Specific Differences in Gag-Protease-Driven Replication Capacity Are Consistent with Intersubtype Differences in HIV-1 Disease Progression. Journal of Virology, 91(13), e00253-17. https://doi.org/10.1128/JVI.00253-17

Chanda, M. M., Ortblad, K. F., Mwale, M., Chongo, S., Kanchele, C., Kamungoma, N., … Oldenburg, C. E. (2017). Contraceptive use and unplanned pregnancy among female sex workers in Zambia. Contraception, 96(3), 196–202. https://doi.org/10.1016/j.contraception.2017.07.003

Kiwuwa-Muyingo, S., Nazziwa, J., Ssemwanga, D., Ilmonen, P., Njai, H., Ndembi, N., … Kaleebu, P. (2017). HIV-1 transmission networks in high risk fishing communities on the shores of Lake Victoria in Uganda: A phylogenetic and epidemiological approach. PLOS ONE, 12(10), e0185818. https://doi.org/10.1371/journal.pone.0185818

Chang, C. C., Kangethe, R., Omarjee, S., Hiramen, K., Gosnell, B., Sojane, K., … Ndung’u, T. (2017). Relationship of Human Immunodeficiency Virus Viral Load in Cerebrospinal Fluid and Plasma in Patients Co-infected With Cryptococcal Meningitis. Open Forum Infectious Diseases, 4(2). https://doi.org/10.1093/ofid/ofx032

Kugathasan, R., Collier, D. A., Haddow, L. J., El Bouzidi, K., Edwards, S. G., Cartledge, J. D., … Gupta, R. K. (2017). Diffuse White Matter Signal Abnormalities on Magnetic Resonance Imaging Are Associated With Human Immunodeficiency Virus Type 1 Viral Escape in the Central Nervous System Among Patients With Neurological Symptoms. Clinical Infectious Diseases, 64(8), 1059–1065. https://doi.org/10.1093/cid/cix035

Collier, D., Iwuji, C., Derache, A., de Oliveira, T., Okesola, N., Calmy, A., … Gupta, R. K. (2017). Virological Outcomes of Second-line Protease Inhibitor–Based Treatment for Human Immunodeficiency Virus Type 1 in a High-Prevalence Rural South African Setting: A Competing-Risks Prospective Cohort Analysis. Clinical Infectious Diseases, 64(8), 1006–1016. https://doi.org/10.1093/cid/cix015

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Cordes, J. L., Stangl, A., Krishnaratne, S., Hoddinott, G., Mathema, H., Bond, V., … Hargreaves, J. R. (2017). Trends in Responses to DHS Questions Should Not Be Interpreted as Reflecting an Increase in “Anticipated Stigma” in Africa: JAIDS Journal of Acquired Immune Deficiency Syndromes, 75(1), e22–e23. https://doi.org/10.1097/QAI.0000000000001328

Lampejo, T., Bruce, M., Teall, A., Dall’Antonia, M., Crawley-Boevey, E., Grant, P., … Nastouli, E. (2017). Caring for a patient with rabies: implications of the Milwaukee protocol for infection control and public health measures. Journal of Hospital Infection, 96(4), 385–391. https://doi.org/10.1016/j.jhin.2017.04.018

Cornell, M., Johnson, L. F., Wood, R., Tanser, F., Fox, M. P., Prozesky, H., … Boulle, A. (2017). Twelve-year mortality in adults initiating antiretroviral therapy in South Africa. Journal of the International AIDS Society, 20(1). https://doi.org/10.7448/IAS.20.1.21902

Lee, G. Q., Orlova-Fink, N., Einkauf, K., Chowdhury, F. Z., Sun, X., Harrington, S., … Lichterfeld, M. (2017). Clonal expansion of genome-intact HIV-1 in functionally polarized Th1 CD4+ T cells. Journal of Clinical Investigation, 127(7), 2689–2696. https://doi.org/10.1172/JCI93289

Cox, H., Dickson-Hall, L., Ndjeka, N., van’t Hoog, A., Grant, A., Cobelens, F., … Nicol, M. (2017). Delays and loss to follow-up before treatment of drug-resistant tuberculosis following implementation of Xpert MTB/RIF in South Africa: A retrospective cohort study. PLOS Medicine, 14(2), e1002238. https://doi.org/10.1371/journal.pmed.1002238

Leitman, E. M., Thobakgale, C. F., Adland, E., Ansari, M. A., Raghwani, J., Prendergast, A. J., … Goulder, P. J. R. (2017). Role of HIV-specific CD8+ T cells in pediatric HIV cure strategies after widespread early viral escape. The Journal of Experimental Medicine. https://doi.org/10.1084/jem.20162123

Cuadros, D. F., Li, J., Branscum, A. J., Akullian, A., Jia, P., Mziray, E. N., & Tanser, F. (2017). Mapping the spatial variability of HIV infection in Sub-Saharan Africa: Effective information for localized HIV prevention and control. Scientific Reports, 7(1), 9093. https://doi.org/10.1038/s41598-017-09464-y

Lessells, R. J., Cooke, G. S., McGrath, N., Nicol, M. P., Newell, M.-L., & Godfrey-Faussett, P. (2017). Impact of Point-of-care Xpert MTB/RIF on Tuberculosis Treatment Initiation: A Cluster Randomised Trial. American Journal of Respiratory and Critical Care Medicine. https://doi.org/10.1164/rccm.201702-0278OC

Cumming, B. M., Chinta, K. C., Reddy, V. P., & Steyn, A. J. C. (2017). Role of Ergothioneine in Microbial Physiology and Pathogenesis. Antioxidants & Redox Signaling. https://doi.org/10.1089/ars.2017.7300

Lewis, J., Payne, H., Walker, A. S., Otwombe, K., Gibb, D. M., Babiker, A. G., … Callard, R. E. (2017). Thymic Output and CD4 T-Cell Reconstitution in HIV-Infected Children on Early and Interrupted Antiretroviral Treatment: Evidence from the Children with HIV Early Antiretroviral Therapy Trial. Frontiers in Immunology, 8, 1162. https://doi.org/10.3389/fimmu.2017.01162

Cumming, B. M., Rahman, M. A., Lamprecht, D. A., Rohde, K. H., Saini, V., Adamson, J. H., … Steyn, A. J. C. (2017). Mycobacterium tuberculosis arrests host cycle at the G1/S transition to establish long term infection. PLOS Pathogens, 13(5), e1006389. https://doi.org/10.1371/journal.ppat.1006389

Mabuka, J. M., Dugast, A.-S., Muema, D. M., Reddy, T., Ramlakhan, Y., Euler, Z., … Ndung’u, T. (2017). Plasma CXCL13 but Not B Cell Frequencies in Acute HIV Infection Predicts Emergence of Cross-Neutralizing Antibodies. Frontiers in Immunology, 8, 1104. https://doi.org/10.3389/fimmu.2017.01104

De Neve, J.-W., & Harling, G. (2017). Offspring schooling associated with increased parental survival in rural KwaZulu-Natal, South Africa. Social Science & Medicine, 176, 149–157. https://doi.org/10.1016/j.socscimed.2017.01.015

Mahamed, D., Boulle, M., Ganga, Y., Mc Arthur, C., Skroch, S., Oom, L., … Sigal, A. (2017). Intracellular growth of Mycobacterium tuberculosis after macrophage cell death leads to serial killing of host cells. ELife, 6. https://doi.org/10.7554/eLife.22028

de Welzen, L., Eldholm, V., Maharaj, K., Manson, A. L., Earl, A. M., & Pym, A. S. (2017). Whole transcriptome and genomic analysis of extensively drug-resistant Mycobacterium tuberculosis clinical isolates identifies downregulation of ethA as a mechanism of ethionamide resistance. Antimicrobial Agents and Chemotherapyhttps://doi.org/10.1128/AAC.01461-17

Maheu-Giroux, M., Tanser, F., Boily, M.-C., Pillay, D., Joseph, S. A., & Bärnighausen, T. (2017a). Determinants of time from HIV infection to linkage-to-care in rural KwaZulu-Natal, South Africa: AIDS, 31(7), 1017–1024. https://doi.org/10.1097/QAD.0000000000001435

Dobra, A., Bärnighausen, T., Vandormael, A., & Tanser, F. (2017). Space-time migration patterns and risk of HIV acquisition in rural South Africa. AIDS (London, England), 31(1), 137–145. https://doi.org/10.1097/QAD.0000000000001292

Maheu-Giroux, M., Tanser, F., Boily, M.-C., Pillay, D., Joseph, S. A., & Bärnighausen, T. (2017b). Determinants of time from HIV infection to linkage-to-care in rural KwaZulu-Natal, South Africa: AIDS, 31(7), 1017–1024. https://doi.org/10.1097/QAD.0000000000001435

Dong, K. L., Moodley, A., Kwon, D. S., Ghebremichael, M. S., Dong, M., Ismail, N., … Ndung’u, T. (n.d.). Detection and treatment of Fiebig stage I HIV-1 infection in young at-risk women in South Africa: a prospective cohort study. The Lancet HIVhttps://doi.org/10.1016/S2352-3018(17)30146-7

Malik, A., Adland, E., Laker, L., Kløverpris, H., Fardoos, R., Roider, J., … Goulder, P. J. R. (2017). Immunodominant cytomegalovirus-specific CD8+ T-cell responses in sub-Saharan African populations. PLOS ONE, 12(12), e0189612. https://doi.org/10.1371/journal.pone.0189612

Dowdy, D. W., Grant, A. D., Dheda, K., Nardell, E., Fielding, K., & Moore, D. A. J. (2017). Designing and Evaluating Interventions to Halt the Transmission of Tuberculosis. The Journal of Infectious Diseases216(suppl_6), S654–S661. https://doi.org/10.1093/infdis/jix320 

 Manne-Goehler, J., Siedner, M., Geldsetzer, P., Harling, G., Montana, L., Rohr, J., … Barnighausen, T. (2017). Leveraging the ART Advantage: diabetes and hypertension along the HIV care cascade in rural South Africa. Open Forum Infectious Diseases, 4(suppl_1), S58–S58. https://doi.org/10.1093/ofid/ofx162.137

Garrett, N. J., McGrath, N., & Mindel, A. (2017). Advancing STI care in low/middle-income countries: has STI syndromic management reached its use-by date? Sexually Transmitted Infections, 93(1), 4. https://doi.org/10.1136/sextrans-2016-052581

Manson, A. L., Cohen, K. A., Abeel, T., Desjardins, C. A., Armstrong, D. T., Barry III, C. E., … Earl, A. M. (2017). Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance. Nat Genet, 49(3), 395–402.

Gatuguta, A., Katusiime, B., Seeley, J., Colombini, M., Mwanzo, I., & Devries, K. (2017). Should community health workers offer support healthcare services to survivors of sexual violence? a systematic review. BMC International Health and Human Rights, 17(1), 28. https://doi.org/10.1186/s12914-017-0137-z

Maskew, M., Bor, J., Hendrickson, C., MacLeod, W., Bärnighausen, T., Pillay, D., … Fox, M. P. (2017). Imputing HIV treatment start dates from routine laboratory data in South Africa: a validation study. BMC Health Services Research, 17(1), 41. https://doi.org/10.1186/s12913-016-1940-2

Geldsetzer, P., De Neve, J.-W., Boudreaux, C., Bärnighausen, T., & Bossert, T. J. (2017). Improving the performance of community health workers in Swaziland: findings from a qualitative study. Human Resources for Health, 15(1), 68. https://doi.org/10.1186/s12960-017-0236-x

 Mitchell, J. M., Tomlinson, M., Bland, R. M., Houle, B., Stein, A., & Rochat, T. J. (2017). Confirmatory factor analysis of the Kaufman assessment battery in a sample of primary school-aged children in rural South Africa. South African Journal of Psychology, 0081246317741822. https://doi.org/10.1177/0081246317741822

Geldsetzer, P., Feigl, A. B., Tanser, F., Gareta, D., Pillay, D., & Bärnighausen, T. (2017). Population-level decline in BMI and systolic blood pressure following mass HIV treatment: Evidence from rural KwaZulu-Natal: Decline in BMI and BP following Mass HIV Treatment. Obesity, 25(1), 200–206. https://doi.org/10.1002/oby.21663

Mkwanazi, N. B., Rochat, T. J., & Bland, R. M. (2017). The Amagugu intervention: a qualitative investigation into maternal experiences and perspectives of a maternal HIV disclosure support intervention in rural South Africa. Health Policy and Planning32(9), 1231–1240. https://doi.org/10.1093/heapol/czx056

Godfrey, C., Thigpen, M. C., Crawford, K. W., Jean-Phillippe, P., Pillay, D., Persaud, D., … Fitzgibbon, J. (2017). Global HIV Antiretroviral Drug Resistance. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jix137

Mlcochova, P., Sutherland, K. A., Watters, S. A., Bertoli, C., de Bruin, R. A., Rehwinkel, J., … Gupta, R. K. (2017). A G1-like state allows HIV-1 to bypass SAMHD1 restriction in macrophages. The EMBO Journal, 36(5), 604–616. https://doi.org/10.15252/embj.201696025

Goodall, R. L., Dunn, D. T., Nkurunziza, P., Mugarura, L., Pattery, T., Munderi, P., … Gupta, R. K. (2017). Rapid accumulation of HIV-1 thymidine analogue mutations and phenotypic impact following prolonged viral failure on zidovudine-based first-line ART in sub-Saharan Africa. Journal of Antimicrobial Chemotherapy, 72(5), 1450–1455. https://doi.org/10.1093/jac/dkw583

Mlcochova, P., Caswell, S. J., Taylor, I. A., Towers, G. J., & Gupta, R. K. (2017). DNA damage induced by topoisomerase inhibitors activates SAMHD1 and blocks HIV-1 infection of macrophages. The EMBO Journal, e201796880. https://doi.org/10.15252/embj.201796880

Gounder, K., Oyaro, M., Padayachi, N., Zulu, T. M., de Oliveira, T., Wylie, J., & Ndung’u, T. (2017). Complex Subtype Diversity of HIV-1 Among Drug Users in Major Kenyan Cities. AIDS Research and Human Retroviruses, 33(5), 500–510. https://doi.org/10.1089/aid.2016.0321

Moosa, A., Lamprecht, D. A., Arora, K., Barry, C. E., Boshoff, H. I. M., Ioerger, T. R., … Warner, D. F. (2017). Susceptibility of Mycobacterium tuberculosis Cytochrome bd Oxidase Mutants to Compounds Targeting the Terminal Respiratory Oxidase, Cytochrome c. Antimicrobial Agents and Chemotherapy, 61(10), e01338-17. https://doi.org/10.1128/AAC.01338-17

Gupta, R. K., Gregson, J., Parkin, N., Haile-Selassie, H., Tanuri, A., Andrade Forero, L., … Bertagnolio, S. (2017). HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression analysis. The Lancet Infectious Diseases. https://doi.org/10.1016/S1473-3099(17)30702-8 

Moshabela, M., Bukenya, D., Darong, G., Wamoyi, J., McLean, E., Skovdal, M., … Wringe, A. (2017). Traditional healers, faith healers and medical practitioners: the contribution of medical pluralism to bottlenecks along the cascade of care for HIV/AIDS in Eastern and Southern Africa. Sexually Transmitted Infections, 93(Suppl 3), e052974. https://doi.org/10.1136/sextrans-2016-052974

Haber, N., Tanser, F., Bor, J., Naidu, K., Mutevedzi, T., Herbst, K., … Bärnighausen, T. (2017). From HIV infection to therapeutic response: a population-based longitudinal HIV cascade-of-care study in KwaZulu-Natal, South Africa. The Lancet HIV, 4(5), e223–e230. https://doi.org/10.1016/S2352-3018(16)30224-7

Mudzengi, D., Sweeney, S., Hippner, P., Kufa, T., Fielding, K., Grant, A. D., … Vassall, A. (2017). The patient costs of care for those with TB and HIV: a cross-sectional study from South Africa. Health Policy and Planning. https://doi.org/10.1093/heapol/czw183

Hainsworth, E. G., Shahmanesh, M., & Stevenson, F. (2017). Exploring the views and experiences of HIV positive patients treated for cancer: a systematic review of the literature. AIDS Care, 1–9. https://doi.org/10.1080/09540121.2017.1381332

Muenchhoff, M., Healy, M., Singh, R., Roider, J., Groll, A., Kindra, C., … Archary, M. (2017). Malnutrition in HIV-Infected Children Is an Indicator of Severe Disease with an Impaired Response to Antiretroviral Therapy. AIDS Research and Human Retroviruses. https://doi.org/10.1089/aid.2016.0261

Hanifa, Y., Fielding, K. L., Chihota, V. N., Adonis, L., Charalambous, S., Foster, N., … Grant, A. D. (2017). A clinical scoring system to prioritise investigation for tuberculosis among adults attending HIV clinics in South Africa. PLOS ONE, 12(8), e0181519. https://doi.org/10.1371/journal.pone.0181519

Mwimanzi, F., Toyoda, M., Mahiti, M., Mann, J. K., Martin, J. N., Bangsberg, D., … Ueno, T. (2017). Relative resistance of MHC-B to Nef-mediated downregulation is conserved among primate lentiviruses and influences antiviral T cell responses in HIV-1-infected individuals. Journal of Virology. https://doi.org/10.1128/JVI.01409-17

Harling, G., Gumede, D., Mutevedzi, T., McGrath, N., Seeley, J., Pillay, D., … Herbst, A. J. (2017). The impact of self-interviews on response patterns for sensitive topics: a randomized trial of electronic delivery methods for a sexual behaviour questionnaire in rural South Africa. BMC Medical Research Methodology, 17(1), 125. https://doi.org/10.1186/s12874-017-0403-8

Naburi, H., Mujinja, P., Kilewo, C., Orsini, N., Bärnighausen, T., Manji, K., … Ekström, A. M. (2017). Job satisfaction and turnover intentions among health care staff providing services for prevention of mother-to-child transmission of HIV in Dar es Salaam, Tanzania. Human Resources for Health, 15, 61. https://doi.org/10.1186/s12960-017-0235-y

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Naidoo, V. L., Mann, J. K., Noble, C., Adland, E., Carlson, J. M., Thomas, J., … Ndung’u, T. (2017). Mother-to-Child HIV Transmission Bottleneck Selects for Consensus Virus with Lower Gag-Protease-Driven Replication Capacity. Journal of Virology, 91(17), e00518-17. https://doi.org/10.1128/JVI.00518-17

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Ngcapu, S., Theys, K., Libin, P., Marconi, C. V., Sunpath, H., Ndung’u, T., & Gordon, L. M. (2017). Characterization of Nucleoside Reverse Transcriptase Inhibitor-Associated Mutations in the RNase H Region of HIV-1 Subtype C Infected Individuals. Viruses9(11). https://doi.org/10.3390/v9110330

Helova, A., Akama, E., Bukusi, E. A., Musoke, P., Nalwa, W. Z., Odeny, T. A., … Abuogi, L. L. (2017). Health facility challenges to the provision of Option B+ in western Kenya: a qualitative study. Health Policy Plan, 32.

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Iwuji, C. C., Orne-Gliemann, J., Larmarange, J., Balestre, E., Thiebaut, R., Tanser, F., … Rekacewicz, C. (2017). Universal test and treat and the HIV epidemic in rural South Africa: a phase 4, open-label, community cluster randomised trial. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30205-9

 

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Jackson, L., Hunter, J., Cele, S., Ferreira, I. M., Young, A., Karim, F., … Sigal, A. (2017). Incomplete inhibition of HIV infection results in more HIV infected lymph node cells by reducing cell death. https://doi.org/10.1101/163352

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Karat, A. S., Tlali, M., Fielding, K. L., Charalambous, S., Chihota, V. N., Churchyard, G. J., … Grant, A. D. (2017). Measuring mortality due to HIV-associated tuberculosis among adults in South Africa: Comparing verbal autopsy, minimally-invasive autopsy, and research data. PLOS ONE, 12(3), e0174097. https://doi.org/10.1371/journal.pone.0174097

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Turbé, V., Gray, E. R., Lawson, V. E., Nastouli, E., Brookes, J. C., Weiss, R. A., … McKendry, R. A. (2017). Towards an ultra-rapid smartphone- connected test for infectious diseases. Scientific Reports, 7(1), 11971. https://doi.org/10.1038/s41598-017-11887-6

Plazy, M., Perriat, D., Gumede, D., Boyer, S., Pillay, D., Dabis, F., Seeley, J., Orne-Gliemann, J. (2017). Implementing universal HIV treatment in a high HIV prevalence and rural South African setting – Field experiences and recommendations of health care providers. PLOS ONE12(11), e0186883. https://doi.org/10.1371/journal.pone.0186883

van der Heijden, Y. F., Karim, F., Mufamadi, G., Zako, L., Chinappa, T., Shepherd, B. E., … Pym, A. S. (2017). Isoniazid-monoresistant tuberculosis is associated with poor treatment outcomes in Durban, South Africa. The International Journal of Tuberculosis and Lung Disease, 21(6), 670–676. https://doi.org/10.5588/ijtld.16.0843

Power, R. A., Tansey, K. E., Buttenschøn, H. N., Cohen-Woods, S., Bigdeli, T., Hall, L. S., … Lewis, C. M. (2017). Genome-wide Association for Major Depression Through Age at Onset Stratification: Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium. Biological Psychiatry, 81(4), 325–335. https://doi.org/10.1016/j.biopsych.2016.05.010

Vandormael, A., Bärnighausen, T., Herbeck, J., Tomita, A., Phillips, A., Pillay, D., … Tanser, F. (2017). Longitudinal trends in the prevalence of detectable HIV viremia: Population-based evidence from rural KwaZulu-Natal, South Africa. Clinical Infectious Diseases, cix976-cix976. https://doi.org/10.1093/cid/cix976

Price, H., Dunn, D., Zachary, T., Vudriko, T., Chirara, M., Kityo, C., … Gilson, R. (2017). Hepatitis B serological markers and plasma DNA concentrations: baseline results from a treatment-monitoring practices trial. AIDS, 31(8), 1109–1117. https://doi.org/10.1097/QAD.0000000000001454

Vandormael, A., de Oliveira, T., Tanser, F., Bärnighausen, T., & Herbeck, J. T. (2017). High percentage of undiagnosed HIV cases within a hyperendemic South African community: a population-based study. Journal of Epidemiology and Community Health, jech-2017-209713. https://doi.org/10.1136/jech-2017-209713

 

Ratmann, O., Wymant, C., Colijn, C., Danaviah, S., Essex, M., Frost, S., … on behalf of the PANGEA-HIV Consort. (2017). HIV-1 Full-Genome Phylogenetics of Generalized Epidemics in Sub-Saharan Africa: Impact of Missing Nucleotide Characters in Next-Generation Sequences. AIDS Research and Human Retroviruses. https://doi.org/10.1089/aid.2017.0061

Vandormael, A., Dobra, A., Bärnighausen, T., de Oliveira, T., & Tanser, F. (2017). Incidence rate estimation, periodic testing and the limitations of the mid-point imputation approach. International Journal of Epidemiologyhttps://doi.org/10.1093/ije/dyx134

Reimers, P., Israel-Ballard, K., Craig, M., Spies, L., Thior, I., Tanser, F., & Coutsoudis, A. (2017). A Cluster Randomised Trial to Determine the Efficacy of the “Feeding Buddies” Programme in Improving Exclusive Breastfeeding Rates Among HIV-Infected Women in Rural KwaZulu-Natal, South Africa. AIDS and Behavior. https://doi.org/10.1007/s10461-017-1865-8

Vassall, A., Siapka, M., Foster, N., Cunnama, L., Ramma, L., Fielding, K., … Sinanovic, E. (2017). Cost-effectiveness of Xpert MTB/RIF for tuberculosis diagnosis in South Africa: a real-world cost analysis and economic evaluation. The Lancet Global Health, 5(7), e710–e719. https://doi.org/10.1016/S2214-109X(17)30205-X

Reniers, G., Blom, S., Lieber, J., Herbst, A. J., Calvert, C., Bor, J., … Hosegood, V. (2017). Tuberculosis mortality and the male survival deficit in rural South Africa: An observational community cohort study. PLOS ONE, 12(10), e0185692. https://doi.org/10.1371/journal.pone.0185692

Vollmer, S., Harttgen, K., Alfven, T., Padayachy, J., Ghys, P., & Bärnighausen, T. (2017). The HIV Epidemic in Sub-Saharan Africa is Aging: Evidence from the Demographic and Health Surveys in Sub-Saharan Africa. AIDS and Behavior, 21(1), 101–113. https://doi.org/10.1007/s10461-016-1591-7

Renju, J., Moshabela, M., McLean, E., Ddaaki, W., Skovdal, M., Odongo, F., … Wringe, A. (2017). ‘Side effects’ are ‘central effects’ that challenge retention in HIV treatment programmes in six sub-Saharan African countries: a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052971. https://doi.org/10.1136/sextrans-2016-052971

Vos, T., Allen, C., Arora, M., Barber, R. M., Bhutta, Z. A., Brown, A., … Murray, C. J. L. (2017). Global, regional, and national incidence, prevalence, and years lived with disability for 310 diseases and injuries, 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1545–1602. https://doi.org/10.1016/S0140-6736(16)31678-6

Report on the Global HIV/AIDS Epidemic. (2000). Geneva: UNAIDS.

Rhee, S.-Y., Varghese, V., Holmes, S. P., Van Zyl, G. U., Steegen, K., Boyd, M. A., … Shafer, R. W. (2017). Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. EBioMedicine, 18(Supplement C), 225–235. https://doi.org/10.1016/j.ebiom.2017.03.024

Walsh, F. J., Bärnighausen, T., Delva, W., Fleming, Y., Khumalo, G., Lejeune, C. L., … Okello, V. (2017). Impact of early initiation versus national standard of care of antiretroviral therapy in Swaziland’s public sector health system: study protocol for a stepped-wedge randomized trial. Trials, 18(1), 383. https://doi.org/10.1186/s13063-017-2128-8

Rochat, T. J., Mitchell, J., Lubbe, A. M., Stein, A., Tomlinson, M., & Bland, R. M. (2017). Communication about HIV and death: Maternal reports of primary school-aged children’s questions after maternal HIV disclosure in rural South Africa. Social Science & Medicine, 172, 124–134. https://doi.org/10.1016/j.socscimed.2016.10.031

White, E., Smit, E., Churchill, D., Collins, S., Booth, C., Tostevin, A., … Dunn, D. T. (2016). No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom. Journal of Infectious Diseases, 214(9), 1302–1308. https://doi.org/10.1093/infdis/jiw213

Rochat, T. J., Houle, B., Stein, A., Pearson, R. M., Newell, M. L., & Bland, R. M. (2017). Cohort Profile: The Siyakhula Cohort, rural South Africa. International Journal of Epidemiology, dyx148-dyx148. https://doi.org/10.1093/ije/dyx148

Wong, E. B., Ndung’u, T., & Kasprowicz, V. O. (2017). The role of mucosal-associated invariant T cells in infectious diseases. Immunology, 150(1), 45–54.  https://doi.org/10.1111/imm.12673 

Rochat, T. J., Stein, A., Cortina-Borja, M., Tanser, F., & Bland, R. M. (2017). The Amagugu intervention for disclosure of maternal HIV to uninfected primary school-aged children in South Africa: a randomised controlled trial. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30133-9

Wringe, A., Moshabela, M., Nyamukapa, C., Bukenya, D., Ondenge, K., Ddaaki, W., … Renju, J. (2017). HIV testing experiences and their implications for patient engagement with HIV care and treatment on the eve of ‘test and treat’: findings from a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052969. https://doi.org/10.1136/sextrans-2016-052969

Rohr, J. K., Xavier Gómez-Olivé, F., Rosenberg, M., Manne-Goehler, J., Geldsetzer, P., Wagner, R. G., … Bärnighausen, T. (2017). Performance of self-reported HIV status in determining true HIV status among older adults in rural South Africa: a validation study. Journal of the International AIDS Society, 20(1). https://doi.org/10.7448/IAS.20.1.21691

Wringe, A., Renju, J., Seeley, J., Moshabela, M., & Skovdal, M. (2017). Bottlenecks to HIV care and treatment in sub-Saharan Africa: a multi-country qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e053172. https://doi.org/10.1136/sextrans-2017-053172

Rosenberg, M. S., Gómez-Olivé, F. X., Rohr, J. K., Houle, B. C., Kabudula, C. W., Wagner, R. G., … Bärnighausen, T. (2017). Sexual Behaviors and HIV Status: A Population-Based Study Among Older Adults in Rural South Africa. JAIDS Journal of Acquired Immune Deficiency Syndromes, 74(1), e9–e17. https://doi.org/10.1097/QAI.0000000000001173

Yadon, A. N., Maharaj, K., Adamson, J. H., Lai, Y.-P., Sacchettini, J. C., Ioerger, T. R., … Pym, A. S. (2017). A comprehensive characterization of PncA polymorphisms that confer resistance to pyrazinamide. Nature Communications, 8(1), 588. https://doi.org/10.1038/s41467-017-00721-2

Rossouw, T., Nieuwoudt, M., Manasa, J., Malherbe, G., Lessells, R., Pillay, S., … de Oliveira, T. (2017). HIV drug resistance levels in adults failing first-line antiretroviral therapy in an urban and a rural setting in South Africa. HIV Medicine, 18(2), 104–114. https://doi.org/10.1111/hiv.12400

Yates, T. A., Khan, P. Y., Knight, G. M., Taylor, J. G., McHugh, T. D., Lipman, M., … Abubakar, I. (n.d.). The transmission of Mycobacterium tuberculosis in high burden settings. The Lancet Infectious Diseases, 16(2), 227–238. https://doi.org/10.1016/S1473-3099(15)00499-5

Sanya, R. E., Tumwesige, E., Elliott, A. M., & Seeley, J. (2017). Perceptions about interventions to control schistosomiasis among the Lake Victoria island communities of Koome, Uganda. PLOS Neglected Tropical Diseases, 11(10), e0005982. https://doi.org/10.1371/journal.pntd.0005982

Yates, T. A., Tanser, F., & Abubakar, I. (2016). Plan Beta for tuberculosis: it’s time to think seriously about poorly ventilated congregate settings. The International Journal of Tuberculosis and Lung Disease, 20(1), 5–10. https://doi.org/10.5588/ijtld.15.0494

Schomaker, M., Leroy, V., Wolfs, T., Technau, K.-G., Renner, L., Judd, A., … Davies, M.-A. (2017). Optimal timing of antiretroviral treatment initiation in HIV-positive children and adolescents: a multiregional analysis from Southern Africa, West Africa and Europe. International Journal of Epidemiology, 46(2), 453–465. https://doi.org/10.1093/ije/dyw097

Zhou, B., Bentham, J., Di Cesare, M., Bixby, H., Danaei, G., Cowan, M. J., … Zuñiga Cisneros, J. (n.d.). Worldwide trends in blood pressure from 1975 to 2015: a pooled analysis of 1479 population-based measurement studies with 19·1 million participants. The Lancet, 389(10064), 37–55. https://doi.org/10.1016/S0140-6736(16)31919-5

Schultze, A., Paredes, R., Sabin, C., Phillips, A. N., Pillay, D., Mackie, N., … Cozzi-Lepri, A. (2017). The association between detected drug resistance mutations and CD4+ T-cell decline in HIV-positive individuals maintained on a failing treatment regimen. Antiviral Therapy. https://doi.org/10.3851/IMP3178

Zhukova, A., Cutino-Moguel, T., Gascuel, O., & Pillay, D. (2017). The Role of Phylogenetics as a Tool to Predict the Spread of Resistance. The Journal of Infectious Diseases, jix411-jix411. https://doi.org/10.1093/infdis/jix411

Seeley, J. (2017). HIV diagnosis increasing in older adults in Europe. The Lancet HIV. https://doi.org/10.1016/S2352-3018(17)30151-0

Zulu, M., Naidoo, K., Mncube, Z., Jaggernath, M., Goulder, P. J., Ndung’u, T., … Thobakgale, C. F. (2017). Reduced Expression of Siglec-7, NKG2A and CD57 on Terminally Differentiated CD56-CD16+ NK Cell Subset is associated with NK Cell Dysfunction in Chronic HIV-1 clade C Infection. AIDS Research and Human Retroviruseshttps://doi.org/10.1089/AID.2017.0095

Shrestha, S., Chihota, V., White, R. G., Grant, A. D., Churchyard, G. J., & Dowdy, D. W. (2017). Impact of Targeted Tuberculosis Vaccination Among a Mining Population in South Africa: A Model-Based Study. American Journal of Epidemiology, 186(12), 1362–1369. https://doi.org/10.1093/aje/kwx192

Simoni, Y., Fehlings, M., Kløverpris, H. N., McGovern, N., Koo, S.-L., Loh, C. Y., … Newell, E. W. (2017). Human Innate Lymphoid Cell Subsets Possess Tissue-Type Based Heterogeneity in Phenotype and Frequency. Immunity, 46(1), 148–161. https://doi.org/10.1016/j.immuni.2016.11.005

Siu, G. E., Wight, D., Seeley, J., Namutebi, C., Sekiwunga, R., Zalwango, F., & Kasule, S. (2017). Men’s Involvement in a Parenting Programme to Reduce Child Maltreatment and Gender-Based Violence: Formative Evaluation in Uganda. The European Journal of Development Research. https://doi.org/10.1057/s41287-017-0103-6

Skovdal, M., Wringe, A., Seeley, J., Renju, J., Paparini, S., Wamoyi, J., … Bonnington, O. (2017). Using theories of practice to understand HIV-positive persons varied engagement with HIV services: a qualitative study in six Sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052977

Ssali, A., Nunn, A., Mbonye, M., Anywaine, Z., & Seeley, J. (2017). Reasons for participating in a randomised clinical trial: The volunteers’ voices in the COSTOP trial in Uganda. Contemporary Clinical Trials Communications, 7(Supplement C), 44–47. https://doi.org/10.1016/j.conctc.2017.05.007

Suthar, A. B., & Bärnighausen, T. (2017). Antiretroviral therapy and population mortality: Leveraging routine national data to advance policy. PLOS Medicine, 14(12), e1002469. https://doi.org/10.1371/journal.pmed.1002469

Suthar, A. B., Nagata, J. M., Nsanzimana, S., Bärnighausen, T., Negussie, E. K., & Doherty, M. C. (2017). Performance-based financing for improving HIV/AIDS service delivery: a systematic review. BMC Health Services Research, 17(1), 6. https://doi.org/10.1186/s12913-016-1962-9

Tanser, F., Vandormael, A., Cuadros, D., Phillips, A. N., de Oliveira, T., Tomita, A., … Pillay, D. (2017). Effect of population viral load on prospective HIV incidence in a hyperendemic rural African community. Science Translational Medicine, 9(420), eaam8012. https://doi.org/10.1126/scitranslmed.aam8012 

Tanser, F., Bärnighausen, T., Dobra, A., & Sartorius, B. (2017). Identifying ‘corridors of HIV transmission’ in a severely affected rural South African population: a case for a shift toward targeted prevention strategies. International Journal of Epidemiology. https://doi.org/10.1093/ije/dyx257 

Thayyil, S., Oliveira, V., Lally, P. J., Swamy, R., Bassett, P., Chandrasekaran, M., … Shankaran, S. (2017). Hypothermia for encephalopathy in low and middle-income countries (HELIX): study protocol for a randomised controlled trial. Trials, 18(1), 432. https://doi.org/10.1186/s13063-017-2165-3

Thobakgale, C., Naidoo, K., McKinnon, L. R., Werner, L., Samsunder, N., Karim, S. A., … Naidoo, K. (2017). Interleukin 1-Beta (IL-1β) Production by Innate Cells Following TLR Stimulation Correlates With TB Recurrence in ART-Treated HIV-Infected Patients. JAIDS Journal of Acquired Immune Deficiency Syndromes, 74(2). Retrieved from http://journals.lww.com/jaids/Fulltext/2017/02010/Interleukin_1_Beta__IL_1___Production_by_Innate.16.aspx

Titanji, B. K., Pillay, D., & Jolly, C. (2017). Combination antiretroviral therapy and cell–cell spread of wild-type and drug-resistant human immunodeficiency virus-1. Journal of General Virology, 98(4), 821–834. https://doi.org/10.1099/jgv.0.000728

Tlou, B., Sartorius, B., & Tanser, F. (2017). Space-time patterns in maternal and mother mortality in a rural South African population with high HIV prevalence (2000–2014): results from a population-based cohort. BMC Public Health, 17(1). https://doi.org/10.1186/s12889-017-4463-9

Tlou, B., Sartorius, B., & Tanser, F. (2017). Space-time variations in child mortality in a rural South African population with high HIV prevalence (2000–2014). PLOS ONE, 12(8), e0182478. https://doi.org/10.1371/journal.pone.0182478

Tomita, A., Vandormael, A. M., Bärnighausen, T., de Oliveira, T., & Tanser, F. (2017). Social Disequilibrium and the Risk of HIV Acquisition: A Multilevel Study in Rural KwaZulu-Natal Province, South Africa. JAIDS Journal of Acquired Immune Deficiency Syndromes, 75(2), 164–174. https://doi.org/10.1097/QAI.0000000000001349

 

Tomita, A., Vandormael, A. M., Cuadros, D., Di Minin, E., Heikinheimo, V., Tanser, F., … Burns, J. K. (2017). Green environment and incident depression in South Africa: a geospatial analysis and mental health implications in a resource-limited setting. The Lancet Planetary Health, 1(4), e152–e162. https://doi.org/10.1016/S2542-5196(17)30063-3

Tostevin, A., White, E., Dunn, D., Croxford, S., Delpech, V., Williams, I., … Bradley?Stewart, A. (2017). Recent trends and patterns in HIV?1 transmitted drug resistance in the United Kingdom. HIV Medicine, 18(3), 204–213. https://doi.org/10.1111/hiv.12414 

Turbé, V., Gray, E. R., Lawson, V. E., Nastouli, E., Brookes, J. C., Weiss, R. A., … McKendry, R. A. (2017). Towards an ultra-rapid smartphone- connected test for infectious diseases. Scientific Reports, 7(1), 11971. https://doi.org/10.1038/s41598-017-11887-6

van der Heijden, Y. F., Karim, F., Mufamadi, G., Zako, L., Chinappa, T., Shepherd, B. E., … Pym, A. S. (2017). Isoniazid-monoresistant tuberculosis is associated with poor treatment outcomes in Durban, South Africa. The International Journal of Tuberculosis and Lung Disease, 21(6), 670–676. https://doi.org/10.5588/ijtld.16.0843

Vandormael, A., Bärnighausen, T., Herbeck, J., Tomita, A., Phillips, A., Pillay, D., … Tanser, F. (2017). Longitudinal trends in the prevalence of detectable HIV viremia: Population-based evidence from rural KwaZulu-Natal, South Africa. Clinical Infectious Diseases, cix976-cix976. https://doi.org/10.1093/cid/cix976

Vandormael, A., de Oliveira, T., Tanser, F., Bärnighausen, T., & Herbeck, J. T. (2017). High percentage of undiagnosed HIV cases within a hyperendemic South African community: a population-based study. Journal of Epidemiology and Community Health, jech-2017-209713. https://doi.org/10.1136/jech-2017-209713

 

Vandormael, A., Dobra, A., Bärnighausen, T., de Oliveira, T., & Tanser, F. (2017). Incidence rate estimation, periodic testing and the limitations of the mid-point imputation approach. International Journal of Epidemiologyhttps://doi.org/10.1093/ije/dyx134

Vassall, A., Siapka, M., Foster, N., Cunnama, L., Ramma, L., Fielding, K., … Sinanovic, E. (2017). Cost-effectiveness of Xpert MTB/RIF for tuberculosis diagnosis in South Africa: a real-world cost analysis and economic evaluation. The Lancet Global Health, 5(7), e710–e719. https://doi.org/10.1016/S2214-109X(17)30205-X

Vollmer, S., Harttgen, K., Alfven, T., Padayachy, J., Ghys, P., & Bärnighausen, T. (2017). The HIV Epidemic in Sub-Saharan Africa is Aging: Evidence from the Demographic and Health Surveys in Sub-Saharan Africa. AIDS and Behavior, 21(1), 101–113. https://doi.org/10.1007/s10461-016-1591-7

Vos, T., Allen, C., Arora, M., Barber, R. M., Bhutta, Z. A., Brown, A., … Murray, C. J. L. (2017). Global, regional, and national incidence, prevalence, and years lived with disability for 310 diseases and injuries, 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1545–1602. https://doi.org/10.1016/S0140-6736(16)31678-6

Walsh, F. J., Bärnighausen, T., Delva, W., Fleming, Y., Khumalo, G., Lejeune, C. L., … Okello, V. (2017). Impact of early initiation versus national standard of care of antiretroviral therapy in Swaziland’s public sector health system: study protocol for a stepped-wedge randomized trial. Trials, 18(1), 383. https://doi.org/10.1186/s13063-017-2128-8

White, E., Smit, E., Churchill, D., Collins, S., Booth, C., Tostevin, A., … Dunn, D. T. (2016). No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom. Journal of Infectious Diseases, 214(9), 1302–1308. https://doi.org/10.1093/infdis/jiw213

Wong, E. B., Ndung’u, T., & Kasprowicz, V. O. (2017). The role of mucosal-associated invariant T cells in infectious diseases. Immunology, 150(1), 45–54.  https://doi.org/10.1111/imm.12673 

Wringe, A., Moshabela, M., Nyamukapa, C., Bukenya, D., Ondenge, K., Ddaaki, W., … Renju, J. (2017). HIV testing experiences and their implications for patient engagement with HIV care and treatment on the eve of ‘test and treat’: findings from a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052969. https://doi.org/10.1136/sextrans-2016-052969

Wringe, A., Renju, J., Seeley, J., Moshabela, M., & Skovdal, M. (2017). Bottlenecks to HIV care and treatment in sub-Saharan Africa: a multi-country qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e053172. https://doi.org/10.1136/sextrans-2017-053172

Yadon, A. N., Maharaj, K., Adamson, J. H., Lai, Y.-P., Sacchettini, J. C., Ioerger, T. R., … Pym, A. S. (2017). A comprehensive characterization of PncA polymorphisms that confer resistance to pyrazinamide. Nature Communications, 8(1), 588. https://doi.org/10.1038/s41467-017-00721-2

Yates, T. A., Khan, P. Y., Knight, G. M., Taylor, J. G., McHugh, T. D., Lipman, M., … Abubakar, I. (n.d.). The transmission of Mycobacterium tuberculosis in high burden settings. The Lancet Infectious Diseases, 16(2), 227–238. https://doi.org/10.1016/S1473-3099(15)00499-5

Yates, T. A., Tanser, F., & Abubakar, I. (2016). Plan Beta for tuberculosis: it’s time to think seriously about poorly ventilated congregate settings. The International Journal of Tuberculosis and Lung Disease, 20(1), 5–10. https://doi.org/10.5588/ijtld.15.0494

Zhou, B., Bentham, J., Di Cesare, M., Bixby, H., Danaei, G., Cowan, M. J., … Zuñiga Cisneros, J. (n.d.). Worldwide trends in blood pressure from 1975 to 2015: a pooled analysis of 1479 population-based measurement studies with 19·1 million participants. The Lancet, 389(10064), 37–55. https://doi.org/10.1016/S0140-6736(16)31919-5

Zhukova, A., Cutino-Moguel, T., Gascuel, O., & Pillay, D. (2017). The Role of Phylogenetics as a Tool to Predict the Spread of Resistance. The Journal of Infectious Diseases, jix411-jix411. https://doi.org/10.1093/infdis/jix411

Zulu, M., Naidoo, K., Mncube, Z., Jaggernath, M., Goulder, P. J., Ndung’u, T., … Thobakgale, C. F. (2017). Reduced Expression of Siglec-7, NKG2A and CD57 on Terminally Differentiated CD56-CD16+ NK Cell Subset is associated with NK Cell Dysfunction in Chronic HIV-1 clade C Infection. AIDS Research and Human Retroviruseshttps://doi.org/10.1089/AID.2017.0095

2016 Publications

Aicken, C. R. H., Fuller, S. S., Sutcliffe, L. J., Estcourt, C. S., Gkatzidou, V., Oakeshott, P., … Shahmanesh, M. (2016). Young people’s perceptions of smartphone-enabled self-testing and online care for sexually transmitted infections: qualitative interview study. BMC Public Health, 16(1), 974. https://doi.org/10.1186/s12889-016-3648-y

Atun, R., Chang, A. Y., Ogbuoji, O., Silva, S., Resch, S., Hontelez, J., & Bärnighausen, T. (2016). Long-term financing needs for HIV control in sub-Saharan Africa in 2015–2050: a modelling study. BMJ Open, 6(3). https://doi.org/10.1136/bmjopen-2015-009656

Barnhart, D., Hertzmark, E., Liu, E., Mungure, E., Muya, A. N., Sando, D., … Spiegelman, D. (2016). Intra-cluster correlation estimates for HIV-related outcomes from care and treatment clinics in Dar es Salaam, Tanzania. Contemporary Clinical Trials Communications, 4, 161–169. https://doi.org/10.1016/j.conctc.2016.09.001

Bärnighausen, T., Bloom, D. E., & Humair, S. (2016). Human Resources for Treating HIV/AIDS: Are the Preventive Effects of Antiretroviral Treatment a Game Changer? PLOS ONE, 11(10), e0163960. https://doi.org/10.1371/journal.pone.0163960

BCCP: Botswana Combination Prevention Project. clinicaltrials.gov. 2015. https://clinicaltrials.gov/ct2/show/NCT01965470. Accessed 1 Sept 2016. (n.d.). Retrieved from https://clinicaltrials.gov/ct2/show/NCT01965470

Bohlius, J., Maxwell, N., Spoerri, A., Wainwright, R., Sawry, S., Poole, J., … for IeDEA-Southern Africa. (2016). Incidence of AIDS-Defining and Other Cancers in HIV-Positive Children in South Africa: Record Linkage Study. The Pediatric Infectious Disease Journal, 35(6), e164–e170. https://doi.org/10.1097/INF.0000000000001117

 

Boullé, M., Müller, T. G., Dähling, S., Ganga, Y., Jackson, L., Mahamed, D., … Sigal, A. (2016). HIV Cell-to-Cell Spread Results in Earlier Onset of Viral Gene Expression by Multiple Infections per Cell. PLOS Pathogens, 12(11), e1005964. https://doi.org/10.1371/journal.ppat.1005964

Boyer, S., Iwuji, C., Gosset, A., Protopopescu, C., Okesola, N., Plazy, M., … on behalf of the ANRS 12249 TasP study group. (2016). Factors associated with antiretroviral treatment initiation amongst HIV-positive individuals linked to care within a universal test and treat programme: early findings of the ANRS 12249 TasP trial in rural South Africa. AIDS Care, 28(Suppl 3), 39–51. https://doi.org/10.1080/09540121.2016.1164808

Brice, J., Sylla, M., Sayon, S., Telly, F., Bocar-Fofana, D., Murphy, R., … Maiga, A. I. (2016). Qualitative and quantitative HIV antibodies and viral reservoir size characterization in vertically infected children with virological suppression. Journal of Antimicrobial Chemotherapy, dkw537. https://doi.org/10.1093/jac/dkw537

Byrne, E. H., Anahtar, M. N., Cohen, K. E., Moodley, A., Padavattan, N., Ismail, N., … Kwon, D. S. (2016). Association between injectable progestin-only contraceptives and HIV acquisition and HIV target cell frequency in the female genital tract in South African women: a prospective cohort study. The Lancet Infectious Diseases, 16(4), 441–448. https://doi.org/10.1016/S1473-3099(15)00429-6

Carlson, J. M., Du, V. Y., Pfeifer, N., Bansal, A., Tan, V. Y. F., Power, K., … Goepfert, P. A. (2016). Impact of pre-adapted HIV transmission. Nature Medicine, 22(6), 606–613. https://doi.org/10.1038/nm.4100

Channon, M., Hosegood, V., & McGrath, N. (2016). A longitudinal population-based analysis of relationship status and mortality in KwaZulu-Natal, South Africa 2001–2011. Journal of Epidemiology and Community Health, 70(1), 56–64. https://doi.org/10.1136/jech-2014-205408

Chen, Z., Hu, Y., Cumming, B. M., Lu, P., Feng, L., Deng, J., … Chen, S. (n.d.). Mycobacterial WhiB6 Differentially Regulates ESX-1 and the Dos Regulon to Modulate Granuloma Formation and Virulence in Zebrafish. Cell Reports, 16(9), 2512–2524. https://doi.org/10.1016/j.celrep.2016.07.080

Leitman, E. M., Thobakgale, C. F., Adland, E., Ansari, M. A., Raghwani, J., Prendergast, A. J., … Goulder, P. J. R. (2017). Role of HIV-specific CD8+ T cells in pediatric HIV cure strategies after widespread early viral escape. The Journal of Experimental Medicine. https://doi.org/10.1084/jem.20162123

 Chetty, T., Thorne, C., Tanser, F., Bärnighausen, T., & Coutsoudis, A. (2016). Cohort profile: the Hlabisa pregnancy cohort, KwaZulu-Natal, South Africa. BMJ Open, 6(10), e012088. https://doi.org/10.1136/bmjopen-2016-012088

Chikovore, J., Gillespie, N., McGrath, N., Orne-Gliemann, J., Zuma, T., & On Behalf of the ANRS 12249 TasP Study Group. (2016). Men, masculinity, and engagement with treatment as prevention in KwaZulu-Natal, South Africa. AIDS Care, 28(sup3), 74–82. https://doi.org/10.1080/09540121.2016.1178953

Chinta, K. C., Saini, V., Glasgow, J. N., Mazorodze, J. H., Rahman, M. A., Reddy, D., … Steyn, A. J. C. (2016). The emerging role of gasotransmitters in the pathogenesis of tuberculosis. Nitric Oxide, 59, 28–41. https://doi.org/10.1016/j.niox.2016.06.009

Cohen, K. A., El-Hay, T., Wyres, K. L., Weissbrod, O., Munsamy, V., Yanover, C., … Pym, A. S. (n.d.). Paradoxical Hypersusceptibility of Drug-resistant Mycobacteriumtuberculosis to β-lactam Antibiotics. EBioMedicine, 9, 170–179. https://doi.org/10.1016/j.ebiom.2016.05.041

Conroy, A. A., McGrath, N., van Rooyen, H., Hosegood, V., Johnson, M. O., Fritz, K., … Darbes, L. A. (2016). Power and the association with relationship quality in South African couples: Implications for HIV/AIDS interventions. Social Science & Medicine, 153, 1–11. https://doi.org/10.1016/j.socscimed.2016.01.035

 Delva, W., Leventhal, G. E., & Helleringer, S. (2016). Connecting the dots: network data and models in HIV epidemiology. AIDS, 30. https://doi.org/10.1097/QAD.0000000000001184

Desjardins, C. A., Cohen, K. A., Munsamy, V., Abeel, T., Maharaj, K., Walker, B. J., … Pym, A. S. (2016). Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance. Nature Genetics, 48(5), 544–551. https://doi.org/10.1038/ng.3548

Dimitrov, D. T., Boily, M.-C., Hallett, T. B., Albert, J., Boucher, C., Mellors, J. W., … van de Vijver, D. A. M. C. (2016). How Much Do We Know about Drug Resistance Due to PrEP Use? Analysis of Experts’ Opinion and Its Influence on the Projected Public Health Impact. PLoS ONE, 11(7), e0158620. https://doi.org/10.1371/journal.pone.0158620

 El Bouzidi, K., White, E., Mbisa, J. L., Sabin, C. A., Phillips, A. N., Mackie, N., … Dunn, D. T. (2016). HIV-1 drug resistance mutations emerging on darunavir therapy in PI-naive and -experienced patients in the UK. Journal of Antimicrobial Chemotherapy, 71(12), 3487–3494. https://doi.org/10.1093/jac/dkw343

Evangeli, M., Newell, M.-L., & McGrath, N. (2016). Factors associated with pre-ART loss-to-follow up in adults in rural KwaZulu-Natal, South Africa: a prospective cohort study. BMC Public Health, 16(1), 358. https://doi.org/10.1186/s12889-016-3025-x

Feigl, A. B., Bloom, D. E., Danaei, G., Pillay, D., Salomon, J. A., Tanser, F., & Bärnighausen, T. W. (2016). The Effect of HIV and the Modifying Effect of Anti-Retroviral Therapy (ART) on Body Mass Index (BMI) and Blood Pressure Levels in Rural South Africa. PLOS ONE, 11(8), e0158264. https://doi.org/10.1371/journal.pone.0158264

Ferns, R. B., Tarr, A. W., Hue, S., Urbanowicz, R. A., McClure, C. P., Gilson, R., … Pillay, D. (2016). Hepatitis C virus quasispecies and pseudotype analysis from acute infection to chronicity in HIV-1 co-infected individuals. Virology, 492, 213–224. https://doi.org/10.1016/j.virol.2016.02.003

Fox, M. P., Rosen, S., Geldsetzer, P., Bärnighausen, T., Negussie, E., & Beanland, R. (2016). Interventions to improve the rate or timing of initiation of antiretroviral therapy for HIV in sub-Saharan Africa: meta-analyses of effectiveness. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20888

Garrett, N. J., McGrath, N., & Mindel, A. (2017). Advancing STI care in low/middle-income countries: has STI syndromic management reached its use-by date? Sexually Transmitted Infections, 93(1), 4. https://doi.org/10.1136/sextrans-2016-052581

Geldsetzer, P., Fink, G., Vaikath, M., & Bärnighausen, T. (2016). Sampling for Patient Exit Interviews: Assessment of Methods Using Mathematical Derivation and Computer Simulations. Health Services Research. https://doi.org/10.1111/1475-6773.12611

 Geldsetzer, P., Ortblad, K., & Bärnighausen, T. (2016). The efficiency of chronic disease care in sub-Saharan Africa. BMC Medicine, 14(1). https://doi.org/10.1186/s12916-016-0675-6

Geldsetzer, P., Yapa, H. M. N., Vaikath, M., Ogbuoji, O., Fox, M. P., Essajee, S. M., … Bärnighausen, T. (2016). A systematic review of interventions to improve postpartum retention of women in PMTCT and ART care. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20679

Ginsburg, C., Bocquier, P., Béguy, D., Afolabi, S., Augusto, O., Derra, K., … Collinson, M. A. (2016). Healthy or unhealthy migrants? Identifying internal migration effects on mortality in Africa using health and demographic surveillance systems of the INDEPTH network. Social Science & Medicine, 164, 59–73. https://doi.org/10.1016/j.socscimed.2016.06.035

Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. (2016). The Lancet Infectious Diseases, 16(5), 565–575. https://doi.org/10.1016/S1473-3099(15)00536-8

Gosmann, C., Anahtar, M. N., Handley, S. A., Farcasanu, M., Abu-Ali, G., Bowman, B. A., … Kwon, D. S. (n.d.). Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women. Immunity, 46(1), 29–37. https://doi.org/10.1016/j.immuni.2016.12.013

Gounder, K., Oyaro, M., Padayachi, N., Zulu, T. M., de Oliveira, T., Wylie, J., & Ndung’u, T. (2017). Complex Subtype Diversity of HIV-1 Among Drug Users in Major Kenyan Cities. AIDS Research and Human Retroviruses, 33(5), 500–510. https://doi.org/10.1089/aid.2016.0321

Grimsrud, A., Cornell, M., Schomaker, M., Fox, M. P., Orrell, C., Prozesky, H., … Myer, L. (2016). CD4 count at antiretroviral therapy initiation and the risk of loss to follow-up: results from a multicentre cohort study. Journal of Epidemiology and Community Health, 70(6), 549–555. https://doi.org/10.1136/jech-2015-206629

Aicken, C. R. H., Fuller, S. S., Sutcliffe, L. J., Estcourt, C. S., Gkatzidou, V., Oakeshott, P., … Shahmanesh, M. (2016). Young people’s perceptions of smartphone-enabled self-testing and online care for sexually transmitted infections: qualitative interview study. BMC Public Health, 16(1), 974. https://doi.org/10.1186/s12889-016-3648-y

 Haber, N., Pillay, D., Porter, K., & Bärnighausen, T. (2016). Constructing the cascade of HIV care: methods for measurement. Current Opinion in HIV and AIDS, 11(1), 102–108. https://doi.org/10.1097/COH.0000000000000212

Atun, R., Chang, A. Y., Ogbuoji, O., Silva, S., Resch, S., Hontelez, J., & Bärnighausen, T. (2016). Long-term financing needs for HIV control in sub-Saharan Africa in 2015–2050: a modelling study. BMJ Open, 6(3). https://doi.org/10.1136/bmjopen-2015-009656

Harling, G., & Bärnighausen, T. (2016). The role of partners’ educational attainment in the association between HIV and education amongst women in seven sub-Saharan African countries. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20038

Barnhart, D., Hertzmark, E., Liu, E., Mungure, E., Muya, A. N., Sando, D., … Spiegelman, D. (2016). Intra-cluster correlation estimates for HIV-related outcomes from care and treatment clinics in Dar es Salaam, Tanzania. Contemporary Clinical Trials Communications, 4, 161–169. https://doi.org/10.1016/j.conctc.2016.09.001

Harvala, H., Frampton, D., Grant, P., Raffle, J., Ferns, R. B., Kozlakidis, Z., … For the ICONIC Consortium. (2017). Emergence of a novel subclade of influenza A(H3N2) virus in London, December 2016 to January 2017. Eurosurveillance, 22(8). https://doi.org/10.2807/1560-7917.ES.2017.22.8.30466

Bärnighausen, T., Bloom, D. E., & Humair, S. (2016). Human Resources for Treating HIV/AIDS: Are the Preventive Effects of Antiretroviral Treatment a Game Changer? PLOS ONE, 11(10), e0163960. https://doi.org/10.1371/journal.pone.0163960

Heidebrecht, C. L., Podewils, L. J., Pym, A., Mthiyane, T., & Cohen, T. (2016). Assessing Local Risk of Rifampicin-Resistant Tuberculosis in KwaZulu-Natal, South Africa Using Lot Quality Assurance Sampling. PLOS ONE, 11(4), e0153143. https://doi.org/10.1371/journal.pone.0153143

BCCP: Botswana Combination Prevention Project. clinicaltrials.gov. 2015. https://clinicaltrials.gov/ct2/show/NCT01965470. Accessed 1 Sept 2016. (n.d.). Retrieved from https://clinicaltrials.gov/ct2/show/NCT01965470

Heidebrecht, C. L., Podewils, L. J., Pym, A. S., Cohen, T., Mthiyane, T., & Wilson, D. (2016). Assessing the utility of Xpert® MTB/RIF as a screening tool for patients admitted to medical wards in South Africa, 6, 19391.

Bohlius, J., Maxwell, N., Spoerri, A., Wainwright, R., Sawry, S., Poole, J., … for IeDEA-Southern Africa. (2016). Incidence of AIDS-Defining and Other Cancers in HIV-Positive Children in South Africa: Record Linkage Study. The Pediatric Infectious Disease Journal, 35(6), e164–e170. https://doi.org/10.1097/INF.0000000000001117

Hennig, S., Naiker, S., Reddy, T., Egan, D., Kellerman, T., Wiesner, L., … Pym, A. (2016). Effect of SLCO1B1 Polymorphisms on Rifabutin Pharmacokinetics in African HIV-Infected Patients with Tuberculosis. Antimicrobial Agents and Chemotherapy, 60(1), 617–620. https://doi.org/10.1128/AAC.01195-15

 

Boullé, M., Müller, T. G., Dähling, S., Ganga, Y., Jackson, L., Mahamed, D., … Sigal, A. (2016). HIV Cell-to-Cell Spread Results in Earlier Onset of Viral Gene Expression by Multiple Infections per Cell. PLOS Pathogens, 12(11), e1005964. https://doi.org/10.1371/journal.ppat.1005964

Hennig, S., Svensson, E. M., Niebecker, R., Fourie, P. B., Weiner, M. H., Bonora, S., … Karlsson, M. O. (2016). Population pharmacokinetic drug–drug interaction pooled analysis of existing data for rifabutin and HIV PIs. Journal of Antimicrobial Chemotherapy, 71(5), 1330–1340. https://doi.org/10.1093/jac/dkv470

Boyer, S., Iwuji, C., Gosset, A., Protopopescu, C., Okesola, N., Plazy, M., … on behalf of the ANRS 12249 TasP study group. (2016). Factors associated with antiretroviral treatment initiation amongst HIV-positive individuals linked to care within a universal test and treat programme: early findings of the ANRS 12249 TasP trial in rural South Africa. AIDS Care, 28(Suppl 3), 39–51. https://doi.org/10.1080/09540121.2016.1164808

Herbeck, J., & Tanser, F. (2016). Community viral load as an index of HIV transmission potential. The Lancet HIV, 3(4), e152–e154. https://doi.org/10.1016/S2352-3018(16)00036-9

Brice, J., Sylla, M., Sayon, S., Telly, F., Bocar-Fofana, D., Murphy, R., … Maiga, A. I. (2016). Qualitative and quantitative HIV antibodies and viral reservoir size characterization in vertically infected children with virological suppression. Journal of Antimicrobial Chemotherapy, dkw537. https://doi.org/10.1093/jac/dkw537

Hontelez, J. A. C., Tanser, F. C., Naidu, K. K., Pillay, D., & Bärnighausen, T. (2016). The Effect of Antiretroviral Treatment on Health Care Utilization in Rural South Africa: A Population-Based Cohort Study. PLOS ONE, 11(7), e0158015. https://doi.org/10.1371/journal.pone.0158015

Byrne, E. H., Anahtar, M. N., Cohen, K. E., Moodley, A., Padavattan, N., Ismail, N., … Kwon, D. S. (2016). Association between injectable progestin-only contraceptives and HIV acquisition and HIV target cell frequency in the female genital tract in South African women: a prospective cohort study. The Lancet Infectious Diseases, 16(4), 441–448. https://doi.org/10.1016/S1473-3099(15)00429-6

Iwuji, C. C., Orne-Gliemann, J., Larmarange, J., Okesola, N., Tanser, F., Thiebaut, R., … ANRS 12249 TasP trial group. (2016). Uptake of Home-Based HIV Testing, Linkage to Care, and Community Attitudes about ART in Rural KwaZulu-Natal, South Africa: Descriptive Results from the First Phase of the ANRS 12249 TasP Cluster-Randomised Trial. PLOS Medicine, 13(8), e1002107. https://doi.org/10.1371/journal.pmed.1002107

Carlson, J. M., Du, V. Y., Pfeifer, N., Bansal, A., Tan, V. Y. F., Power, K., … Goepfert, P. A. (2016). Impact of pre-adapted HIV transmission. Nature Medicine, 22(6), 606–613. https://doi.org/10.1038/nm.4100

Iwuji C, Orne-Gliemann J, Balestre E, Larmarange J, Thiebaut R, Tanser F, et al. Abstract: The impact of universal test and treat on HIV incidence in a rural South African population: ANRS 12249 TasP trial, 2012-2016. In: International AIDS Conference 2016, Durban, South Africa. Durban; 2016. http://programme.aids2016.org/Abstract/Abstract/10537 . (n.d.). Retrieved from http://programme.aids2016.org/Abstract/Abstract/10537

 

Channon, M., Hosegood, V., & McGrath, N. (2016). A longitudinal population-based analysis of relationship status and mortality in KwaZulu-Natal, South Africa 2001–2011. Journal of Epidemiology and Community Health, 70(1), 56–64. https://doi.org/10.1136/jech-2014-205408

 Jaggernath, M., Naicker, R., Madurai, S., Brockman, M. A., Ndung’u, T., & Gelderblom, H. C. (2016). Diagnostic Accuracy of the HemoCue Hb 301, STAT-Site MHgb and URIT-12 Point-of-Care Hemoglobin Meters in a Central Laboratory and a Community Based Clinic in Durban, South Africa. PLOS ONE, 11(4), e0152184. https://doi.org/10.1371/journal.pone.0152184

Chen, Z., Hu, Y., Cumming, B. M., Lu, P., Feng, L., Deng, J., … Chen, S. (n.d.). Mycobacterial WhiB6 Differentially Regulates ESX-1 and the Dos Regulon to Modulate Granuloma Formation and Virulence in Zebrafish. Cell Reports, 16(9), 2512–2524. https://doi.org/10.1016/j.celrep.2016.07.080

Jain, P., Weinrick, B. C., Kalivoda, E. J., Yang, H., Munsamy, V., Vilcheze, C., … Jacobs, W. R. (2016). Dual-Reporter Mycobacteriophages (Φ 2 DRMs) Reveal Preexisting Mycobacterium tuberculosis Persistent Cells in Human Sputum. MBio, 7(5), e01023-16. https://doi.org/10.1128/mBio.01023-16

Leitman, E. M., Thobakgale, C. F., Adland, E., Ansari, M. A., Raghwani, J., Prendergast, A. J., … Goulder, P. J. R. (2017). Role of HIV-specific CD8+ T cells in pediatric HIV cure strategies after widespread early viral escape. The Journal of Experimental Medicine. https://doi.org/10.1084/jem.20162123

Johnson, L. F., Keiser, O., Fox, M. P., Tanser, F., Cornell, M., Hoffmann, C. J., … for the International Epidemiologic Databases to Evaluate AIDS Southern Africa (IeDEA-SA) Collaboration. (2016). Life expectancy trends in adults on antiretroviral treatment in South Africa. AIDS, 30(16). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2016/10230/Life_expectancy_trends_in_adults_on_antiretroviral.16.aspx

 Chetty, T., Thorne, C., Tanser, F., Bärnighausen, T., & Coutsoudis, A. (2016). Cohort profile: the Hlabisa pregnancy cohort, KwaZulu-Natal, South Africa. BMJ Open, 6(10), e012088. https://doi.org/10.1136/bmjopen-2016-012088

Kaposi Sarcoma Risk in HIV-Infected Children and Adolescents on Combination Antiretroviral Therapy From Sub-Saharan Africa, Europe, and Asia. (2016). Clinical Infectious Diseases, ciw519. https://doi.org/10.1093/cid/ciw519

Chikovore, J., Gillespie, N., McGrath, N., Orne-Gliemann, J., Zuma, T., & On Behalf of the ANRS 12249 TasP Study Group. (2016). Men, masculinity, and engagement with treatment as prevention in KwaZulu-Natal, South Africa. AIDS Care, 28(sup3), 74–82. https://doi.org/10.1080/09540121.2016.1178953

Karat, A. S., Omar, T., von Gottberg, A., Tlali, M., Chihota, V. N., Churchyard, G. J., … Grant, A. D. (2016). Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa. PLOS ONE, 11(11), e0166158. https://doi.org/10.1371/journal.pone.0166158

Chinta, K. C., Saini, V., Glasgow, J. N., Mazorodze, J. H., Rahman, M. A., Reddy, D., … Steyn, A. J. C. (2016). The emerging role of gasotransmitters in the pathogenesis of tuberculosis. Nitric Oxide, 59, 28–41. https://doi.org/10.1016/j.niox.2016.06.009

Karnon, J., & Orji, N. (2016). Option B+ for the prevention of mother-to-child transmission of HIV infection in developing countries: a review of published cost-effectiveness analyses. Health Policy Plan, 31. https://doi.org/10.1093/heapol/czw025

Cohen, K. A., El-Hay, T., Wyres, K. L., Weissbrod, O., Munsamy, V., Yanover, C., … Pym, A. S. (n.d.). Paradoxical Hypersusceptibility of Drug-resistant Mycobacteriumtuberculosis to β-lactam Antibiotics. EBioMedicine, 9, 170–179. https://doi.org/10.1016/j.ebiom.2016.05.041

Kasprowicz, V. O., Cheng, T.-Y., Ndung’u, T., Sunpath, H., Moody, D. B., & Kasmar, A. G. (2016). HIV Disrupts Human T Cells That Target Mycobacterial Glycolipids. Journal of Infectious Diseases, 213(4), 628–633. https://doi.org/10.1093/infdis/jiv455

Conroy, A. A., McGrath, N., van Rooyen, H., Hosegood, V., Johnson, M. O., Fritz, K., … Darbes, L. A. (2016). Power and the association with relationship quality in South African couples: Implications for HIV/AIDS interventions. Social Science & Medicine, 153, 1–11. https://doi.org/10.1016/j.socscimed.2016.01.035

Kassebaum, N. J., Arora, M., Barber, R. M., Bhutta, Z. A., Brown, J., Carter, A., … Murray, C. J. L. (2016). Global, regional, and national disability-adjusted life-years (DALYs) for 315 diseases and injuries and healthy life expectancy (HALE), 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1603–1658. https://doi.org/10.1016/S0140-6736(16)31460-X

 Delva, W., Leventhal, G. E., & Helleringer, S. (2016). Connecting the dots: network data and models in HIV epidemiology. AIDS, 30. https://doi.org/10.1097/QAD.0000000000001184

Kassebaum, N. J., Barber, R. M., Bhutta, Z. A., Dandona, L., Gething, P. W., Hay, S. I., … Murray, C. J. L. (2016). Global, regional, and national levels of maternal mortality, 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1775–1812. https://doi.org/10.1016/S0140-6736(16)31470-2

Desjardins, C. A., Cohen, K. A., Munsamy, V., Abeel, T., Maharaj, K., Walker, B. J., … Pym, A. S. (2016). Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance. Nature Genetics, 48(5), 544–551. https://doi.org/10.1038/ng.3548

Khatamzas, E., Hipp, M. M., Gaughan, D., Pichulik, T., Leslie, A., Fernandes, R. A., … Simmons, A. (2017). Snapin promotes HIV?1 transmission from dendritic cells by dampening TLR8 signaling. The EMBO Journal, 36(20), 2998. https://doi.org/10.15252/embj.201695364

Dimitrov, D. T., Boily, M.-C., Hallett, T. B., Albert, J., Boucher, C., Mellors, J. W., … van de Vijver, D. A. M. C. (2016). How Much Do We Know about Drug Resistance Due to PrEP Use? Analysis of Experts’ Opinion and Its Influence on the Projected Public Health Impact. PLoS ONE, 11(7), e0158620. https://doi.org/10.1371/journal.pone.0158620

Kløverpris, H. N., Kazer, S. W., Mjösberg, J., Mabuka, J. M., Wellmann, A., Ndhlovu, Z., … Leslie, A. (2016). Innate Lymphoid Cells Are Depleted Irreversibly during Acute HIV-1 Infection in the Absence of Viral Suppression. Immunity, 44(2), 391–405. https://doi.org/10.1016/j.immuni.2016.01.006

 El Bouzidi, K., White, E., Mbisa, J. L., Sabin, C. A., Phillips, A. N., Mackie, N., … Dunn, D. T. (2016). HIV-1 drug resistance mutations emerging on darunavir therapy in PI-naive and -experienced patients in the UK. Journal of Antimicrobial Chemotherapy, 71(12), 3487–3494. https://doi.org/10.1093/jac/dkw343

Koofhethile, C. K., Ndhlovu, Z. M., Thobakgale-Tshabalala, C., Prado, J. G., Ismail, N., Mncube, Z., … Ndung’u, T. (2016). CD8 + T Cell Breadth and Ex Vivo Virus Inhibition Capacity Distinguish between Viremic Controllers with and without Protective HLA Class I Alleles. Journal of Virology, 90(15), 6818–6831. https://doi.org/10.1128/JVI.00276-16

Evangeli, M., Newell, M.-L., & McGrath, N. (2016). Factors associated with pre-ART loss-to-follow up in adults in rural KwaZulu-Natal, South Africa: a prospective cohort study. BMC Public Health, 16(1), 358. https://doi.org/10.1186/s12889-016-3025-x

Koto, M. V., & Maharaj, P. (2016). Difficulties facing healthcare workers in the era of AIDS treatment in Lesotho. Sahara J, 13. https://doi.org/10.1080/17290376.2016.1179588

Feigl, A. B., Bloom, D. E., Danaei, G., Pillay, D., Salomon, J. A., Tanser, F., & Bärnighausen, T. W. (2016). The Effect of HIV and the Modifying Effect of Anti-Retroviral Therapy (ART) on Body Mass Index (BMI) and Blood Pressure Levels in Rural South Africa. PLOS ONE, 11(8), e0158264. https://doi.org/10.1371/journal.pone.0158264

Lamprecht, D. A., Finin, P. M., Rahman, M. A., Cumming, B. M., Russell, S. L., Jonnala, S. R., … Steyn, A. J. C. (2016). Turning the respiratory flexibility of Mycobacterium tuberculosis against itself. Nature Communications, 7, 12393. https://doi.org/10.1038/ncomms12393

Ferns, R. B., Tarr, A. W., Hue, S., Urbanowicz, R. A., McClure, C. P., Gilson, R., … Pillay, D. (2016). Hepatitis C virus quasispecies and pseudotype analysis from acute infection to chronicity in HIV-1 co-infected individuals. Virology, 492, 213–224. https://doi.org/10.1016/j.virol.2016.02.003

Leitman, E. M., Hurst, J., Mori, M., Kublin, J., Ndung’u, T., Walker, B. D., … Goulder, P. J. R. (2016). Lower Viral Loads and Slower CD4+ T-Cell Count Decline in MRKAd5 HIV-1 Vaccinees Expressing Disease-Susceptible HLA-B*58:02. The Journal of Infectious Diseases, 214(3), 379–389. https://doi.org/10.1093/infdis/jiw093

Fox, M. P., Rosen, S., Geldsetzer, P., Bärnighausen, T., Negussie, E., & Beanland, R. (2016). Interventions to improve the rate or timing of initiation of antiretroviral therapy for HIV in sub-Saharan Africa: meta-analyses of effectiveness. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20888

Madlala, P., Singh, R., An, P., Werner, L., Mlisana, K., Abdool Karim, S. S., … Ndung’u, T. (2016). Association of Polymorphisms in the Regulatory Region of the Cyclophilin a Gene (PPIA) with Gene Expression and HIV/AIDS Disease Progression. JAIDS Journal of Acquired Immune Deficiency Syndromes, 72(5). Retrieved from http://journals.lww.com/jaids/Fulltext/2016/08150/Association_of_Polymorphisms_in_the_Regulatory.1.aspx

Garrett, N. J., McGrath, N., & Mindel, A. (2017). Advancing STI care in low/middle-income countries: has STI syndromic management reached its use-by date? Sexually Transmitted Infections, 93(1), 4. https://doi.org/10.1136/sextrans-2016-052581

Manasa, J., Danaviah, S., Lessells, R., Elshareef, M., Tanser, F., Wilkinson, E., … for the Southern African Treatment and Resistance Network. (2016). Increasing HIV-1 Drug Resistance Between 2010 and 2012 in Adults Participating in Population-Based HIV Surveillance in Rural KwaZulu-Natal, South Africa. AIDS Research and Human Retroviruses, 32(8), 763–769. https://doi.org/10.1089/aid.2015.0225

Geldsetzer, P., Fink, G., Vaikath, M., & Bärnighausen, T. (2016). Sampling for Patient Exit Interviews: Assessment of Methods Using Mathematical Derivation and Computer Simulations. Health Services Research. https://doi.org/10.1111/1475-6773.12611

Manne-Goehler, J., Atun, R., Stokes, A., Goehler, A., Houinato, D., Houehanou, C., … Bärnighausen, T. (2016). Diabetes diagnosis and care in sub-Saharan Africa: pooled analysis of individual data from 12 countries. The Lancet Diabetes & Endocrinology, 4(11), 903–912. https://doi.org/10.1016/S2213-8587(16)30181-4

 Geldsetzer, P., Ortblad, K., & Bärnighausen, T. (2016). The efficiency of chronic disease care in sub-Saharan Africa. BMC Medicine, 14(1). https://doi.org/10.1186/s12916-016-0675-6

Maraba, N., Karat, A. S., McCarthy, K., Churchyard, G. J., Charalambous, S., Kahn, K., … Chihota, V. (2016). Verbal autopsy-assigned causes of death among adults being investigated for TB in South Africa. Transactions of The Royal Society of Tropical Medicine and Hygiene, 110(9), 510–516. https://doi.org/10.1093/trstmh/trw058

Geldsetzer, P., Yapa, H. M. N., Vaikath, M., Ogbuoji, O., Fox, M. P., Essajee, S. M., … Bärnighausen, T. (2016). A systematic review of interventions to improve postpartum retention of women in PMTCT and ART care. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20679

Marston, M., Nakiyingi-Miiro, J., Hosegood, V., Lutalo, T., Mtenga, B., Zaba, B., & on behalf of the ALPHA network. (2016). Measuring the Impact of Antiretroviral Therapy Roll-Out on Population Level Fertility in Three African Countries. PLOS ONE, 11(3), e0151877. https://doi.org/10.1371/journal.pone.0151877

Ginsburg, C., Bocquier, P., Béguy, D., Afolabi, S., Augusto, O., Derra, K., … Collinson, M. A. (2016). Healthy or unhealthy migrants? Identifying internal migration effects on mortality in Africa using health and demographic surveillance systems of the INDEPTH network. Social Science & Medicine, 164, 59–73. https://doi.org/10.1016/j.socscimed.2016.06.035

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Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. (2016). The Lancet Infectious Diseases, 16(5), 565–575. https://doi.org/10.1016/S1473-3099(15)00536-8

Matthews, P. C., Carlson, J. M., Beloukas, A., Malik, A., Jooste, P., Ogwu, A., … Klenerman, P. (2016). HLA-A is a Predictor of Hepatitis B e Antigen Status in HIV-Positive African Adults. Journal of Infectious Diseases, 213(8), 1248–1252. https://doi.org/10.1093/infdis/jiv592

Gosmann, C., Anahtar, M. N., Handley, S. A., Farcasanu, M., Abu-Ali, G., Bowman, B. A., … Kwon, D. S. (n.d.). Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women. Immunity, 46(1), 29–37. https://doi.org/10.1016/j.immuni.2016.12.013

 McGovern, M. E., Herbst, K., Tanser, F., Mutevedzi, T., Canning, D., Gareta, D., … Bärnighausen, T. (2016). Do gifts increase consent to home-based HIV testing? A difference-in-differences study in rural KwaZulu-Natal, South Africa. International Journal of Epidemiology, 45(6), 2100–2109. https://doi.org/10.1093/ije/dyw122

Gounder, K., Oyaro, M., Padayachi, N., Zulu, T. M., de Oliveira, T., Wylie, J., & Ndung’u, T. (2017). Complex Subtype Diversity of HIV-1 Among Drug Users in Major Kenyan Cities. AIDS Research and Human Retroviruses, 33(5), 500–510. https://doi.org/10.1089/aid.2016.0321

Mitchell, J. M., Rochat, T. J., Houle, B., Stein, A., Newell, M. L., & Bland, R. M. (2016). The effect of maternal and child early life factors on grade repetition among HIV exposed and unexposed children in rural KwaZulu-Natal, South Africa. Journal of Developmental Origins of Health and Disease, 7(02), 185–196. https://doi.org/10.1017/S2040174415007230

Grimsrud, A., Cornell, M., Schomaker, M., Fox, M. P., Orrell, C., Prozesky, H., … Myer, L. (2016). CD4 count at antiretroviral therapy initiation and the risk of loss to follow-up: results from a multicentre cohort study. Journal of Epidemiology and Community Health, 70(6), 549–555. https://doi.org/10.1136/jech-2015-206629

Mitchell, J., Wight, M., Van Heerden, A., & Rochat, T. J. (2016). Intimate partner violence, HIV, and mental health: a triple epidemic of global proportions. International Review of Psychiatry, 28(5), 452–463. https://doi.org/10.1080/09540261.2016.1217829

Mlcochova, P., Sutherland, K. A., Watters, S. A., Bertoli, C., de Bruin, R. A., Rehwinkel, J., … Gupta, R. K. (2017). A G1?like state allows HIV?1 to bypass SAMHD1 restriction in macrophages. The EMBO Journal, 36(5), 604–616. https://doi.org/10.15252/embj.201696025

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Moshabela, M., Bukenya, D., Darong, G., Wamoyi, J., McLean, E., Skovdal, M., … Wringe, A. (2017). Traditional healers, faith healers and medical practitioners: the contribution of medical pluralism to bottlenecks along the cascade of care for HIV/AIDS in Eastern and Southern Africa. Sexually Transmitted Infections, 93(Suppl 3), e052974. https://doi.org/10.1136/sextrans-2016-052974

Harling, G., & Bärnighausen, T. (2016). The role of partners’ educational attainment in the association between HIV and education amongst women in seven sub-Saharan African countries. Journal of the International AIDS Society, 19(1). https://doi.org/10.7448/IAS.19.1.20038

Moshabela, M., Zuma, T., Orne-Gliemann, J., Iwuji, C., Larmarange, J., McGrath, N., & on behalf of the ANRS 12249 TasP Study Group. (2016). “It is better to die”: experiences of traditional health practitioners within the HIV treatment as prevention trial communities in rural South Africa (ANRS 12249 TasP trial). AIDS Care, 28(sup3), 24–32. https://doi.org/10.1080/09540121.2016.1181296

Harvala, H., Frampton, D., Grant, P., Raffle, J., Ferns, R. B., Kozlakidis, Z., … For the ICONIC Consortium. (2017). Emergence of a novel subclade of influenza A(H3N2) virus in London, December 2016 to January 2017. Eurosurveillance, 22(8). https://doi.org/10.2807/1560-7917.ES.2017.22.8.30466

Moyo, S., Vandormael, A., Wilkinson, E., Engelbrecht, S., Gaseitsiwe, S., Kotokwe, K. P., … de Oliveira, T. (2016). Analysis of Viral Diversity in Relation to the Recency of HIV-1C Infection in Botswana. PLOS ONE, 11(8), e0160649. https://doi.org/10.1371/journal.pone.0160649

Heidebrecht, C. L., Podewils, L. J., Pym, A., Mthiyane, T., & Cohen, T. (2016). Assessing Local Risk of Rifampicin-Resistant Tuberculosis in KwaZulu-Natal, South Africa Using Lot Quality Assurance Sampling. PLOS ONE, 11(4), e0153143. https://doi.org/10.1371/journal.pone.0153143

Mthiyane, T., Pym, A., Dheda, K., Rustomjee, R., Reddy, T., & Manie, S. (2016). Longitudinal assessment of health related quality of life of HIV infected patients treated for tuberculosis and HIV in a high burden setting. Quality of Life Research, 25(12), 3067–3076. https://doi.org/10.1007/s11136-016-1332-4

Heidebrecht, C. L., Podewils, L. J., Pym, A. S., Cohen, T., Mthiyane, T., & Wilson, D. (2016). Assessing the utility of Xpert® MTB/RIF as a screening tool for patients admitted to medical wards in South Africa, 6, 19391.

Muenchhoff, M., Adland, E., Karimanzira, O., Crowther, C., Pace, M., Csala, A., … Goulder, P. (2016). Nonprogressing HIV-infected children share fundamental immunological features of nonpathogenic SIV infection. Science Translational Medicine, 8(358), 358ra125-358ra125. https://doi.org/10.1126/scitranslmed.aag1048

Hennig, S., Naiker, S., Reddy, T., Egan, D., Kellerman, T., Wiesner, L., … Pym, A. (2016). Effect of SLCO1B1 Polymorphisms on Rifabutin Pharmacokinetics in African HIV-Infected Patients with Tuberculosis. Antimicrobial Agents and Chemotherapy, 60(1), 617–620. https://doi.org/10.1128/AAC.01195-15

Muenchhoff, M., Healy, M., Singh, R., Roider, J., Groll, A., Kindra, C., … Archary, M. (2017). Malnutrition in HIV-Infected Children Is an Indicator of Severe Disease with an Impaired Response to Antiretroviral Therapy. AIDS Research and Human Retroviruses. https://doi.org/10.1089/aid.2016.0261

Hennig, S., Svensson, E. M., Niebecker, R., Fourie, P. B., Weiner, M. H., Bonora, S., … Karlsson, M. O. (2016). Population pharmacokinetic drug–drug interaction pooled analysis of existing data for rifabutin and HIV PIs. Journal of Antimicrobial Chemotherapy, 71(5), 1330–1340. https://doi.org/10.1093/jac/dkv470

Naburi, H., Mujinja, P., Kilewo, C., Bärnighausen, T., Orsini, N., Manji, K., … Ekström, A. M. (2016). Predictors of Patient Dissatisfaction with Services for Prevention of Mother-To-Child Transmission of HIV in Dar es Salaam, Tanzania. PLOS ONE, 11(10), e0165121. https://doi.org/10.1371/journal.pone.0165121

Herbeck, J., & Tanser, F. (2016). Community viral load as an index of HIV transmission potential. The Lancet HIV, 3(4), e152–e154. https://doi.org/10.1016/S2352-3018(16)00036-9

Napua, M., Pfeiffer, J. T., Chale, F., Hoek, R., Manuel, J., Michel, C., … Sherr, K. (2016). Option B+ in Mozambique: formative research findings for the design of a facility-level clustered randomized controlled trial to improve ART retention in antenatal care. J Acquir Immune Defic Syndr, 72. https://doi.org/10.1097/QAI.0000000000001061

Hontelez, J. A. C., Tanser, F. C., Naidu, K. K., Pillay, D., & Bärnighausen, T. (2016). The Effect of Antiretroviral Treatment on Health Care Utilization in Rural South Africa: A Population-Based Cohort Study. PLOS ONE, 11(7), e0158015. https://doi.org/10.1371/journal.pone.0158015

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Newell, M.-L., & Iwuji, C. (2016). HIV treatment as prevention: applicable in sub-Saharan Africa? The Lancet Infectious Diseases, 16(7), 754–755. https://doi.org/10.1016/S1473-3099(16)30057-3

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 Jaggernath, M., Naicker, R., Madurai, S., Brockman, M. A., Ndung’u, T., & Gelderblom, H. C. (2016). Diagnostic Accuracy of the HemoCue Hb 301, STAT-Site MHgb and URIT-12 Point-of-Care Hemoglobin Meters in a Central Laboratory and a Community Based Clinic in Durban, South Africa. PLOS ONE, 11(4), e0152184. https://doi.org/10.1371/journal.pone.0152184

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Jain, P., Weinrick, B. C., Kalivoda, E. J., Yang, H., Munsamy, V., Vilcheze, C., … Jacobs, W. R. (2016). Dual-Reporter Mycobacteriophages (Φ 2 DRMs) Reveal Preexisting Mycobacterium tuberculosis Persistent Cells in Human Sputum. MBio, 7(5), e01023-16. https://doi.org/10.1128/mBio.01023-16

Oldenburg, C. E., Bärnighausen, T., Tanser, F., Iwuji, C. C., De Gruttola, V., Seage, I., George R., … Harling, G. (2016b). Antiretroviral Therapy to Prevent HIV Acquisition in Serodiscordant Couples in a Hyperendemic Community in Rural South Africa. Clinical Infectious Diseases, 63(4), 548–554. https://doi.org/10.1093/cid/ciw335

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Oldenburg, C. E., Moscoe, E., & Bärnighausen, T. (2016). Regression Discontinuity for Causal Effect Estimation in Epidemiology. Current Epidemiology Reports, 3(3), 233–241. https://doi.org/10.1007/s40471-016-0080-x

Kaposi Sarcoma Risk in HIV-Infected Children and Adolescents on Combination Antiretroviral Therapy From Sub-Saharan Africa, Europe, and Asia. (2016). Clinical Infectious Diseases, ciw519. https://doi.org/10.1093/cid/ciw519

Oldenburg, C. E., Perez-Brumer, A. G., Reisner, S. L., Mayer, K. H., Mimiaga, M. J., Hatzenbuehler, M. L., & Bärnighausen, T. (2016). Human rights protections and HIV prevalence among MSM who sell sex: Cross-country comparisons from a systematic review and meta-analysis. Global Public Health, 1–12. https://doi.org/10.1080/17441692.2016.1149598

Karat, A. S., Omar, T., von Gottberg, A., Tlali, M., Chihota, V. N., Churchyard, G. J., … Grant, A. D. (2016). Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa. PLOS ONE, 11(11), e0166158. https://doi.org/10.1371/journal.pone.0166158

Ondenge, K., Renju, J., Bonnington, O., Moshabela, M., Wamoyi, J., Nyamukapa, C., … Skovdal, M. (2017). ‘I am treated well if I adhere to my HIV medication’: putting patient–provider interactions in context through insights from qualitative research in five sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3), e052973. https://doi.org/10.1136/sextrans-2016-052973

Karnon, J., & Orji, N. (2016). Option B+ for the prevention of mother-to-child transmission of HIV infection in developing countries: a review of published cost-effectiveness analyses. Health Policy Plan, 31. https://doi.org/10.1093/heapol/czw025

Orne-Gliemann, J., Zuma, T., Chikovore, J., Gillespie, N., Grant, M., Iwuji, C., … On Behalf of the TasP Study Group. (2016). Community perceptions of repeat HIV-testing: experiences of the ANRS 12249 Treatment as Prevention trial in rural South Africa. AIDS Care, 28(sup3), 14–23. https://doi.org/10.1080/09540121.2016.1164805

Kasprowicz, V. O., Cheng, T.-Y., Ndung’u, T., Sunpath, H., Moody, D. B., & Kasmar, A. G. (2016). HIV Disrupts Human T Cells That Target Mycobacterial Glycolipids. Journal of Infectious Diseases, 213(4), 628–633. https://doi.org/10.1093/infdis/jiv455

PANGEA_HIV Consortium, ICONIC Project, Yebra, G., Hodcroft, E. B., Ragonnet-Cronin, M. L., Pillay, D., … Kozlakidis, Z. (2016). Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic. Scientific Reports, 6(1). https://doi.org/10.1038/srep39489

Kassebaum, N. J., Arora, M., Barber, R. M., Bhutta, Z. A., Brown, J., Carter, A., … Murray, C. J. L. (2016). Global, regional, and national disability-adjusted life-years (DALYs) for 315 diseases and injuries and healthy life expectancy (HALE), 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1603–1658. https://doi.org/10.1016/S0140-6736(16)31460-X

Power, R. A., Parkhill, J., & de Oliveira, T. (2016). Microbial genome-wide association studies: lessons from human GWAS. Nature Reviews Genetics, 18(1), 41–50. https://doi.org/10.1038/nrg.2016.132

Kassebaum, N. J., Barber, R. M., Bhutta, Z. A., Dandona, L., Gething, P. W., Hay, S. I., … Murray, C. J. L. (2016). Global, regional, and national levels of maternal mortality, 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1775–1812. https://doi.org/10.1016/S0140-6736(16)31470-2

Power, R. A., Tansey, K. E., Buttenschøn, H. N., Cohen-Woods, S., Bigdeli, T., Hall, L. S., … Lewis, C. M. (2017). Genome-wide Association for Major Depression Through Age at Onset Stratification: Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium. Biological Psychiatry, 81(4), 325–335. https://doi.org/10.1016/j.biopsych.2016.05.010

Khatamzas, E., Hipp, M. M., Gaughan, D., Pichulik, T., Leslie, A., Fernandes, R. A., … Simmons, A. (2017). Snapin promotes HIV?1 transmission from dendritic cells by dampening TLR8 signaling. The EMBO Journal, 36(20), 2998. https://doi.org/10.15252/embj.201695364

Reimers, P., Israel-Ballard, K., Spies, L., Tanser, F., Thior, I., Scott Gordon, W., & Coutsoudis, A. (2016). A Protocol for a Cluster Randomized Trial on the Effect of a “feeding buddy” Program on adherence to the Prevention of Mother-To-Child-Transmission Guidelines in a Rural Area of KwaZulu-Natal, South Africa. JAIDS Journal of Acquired Immune Deficiency Syndromes, 72. Retrieved from http://journals.lww.com/jaids/Fulltext/2016/08011/A_Protocol_for_a_Cluster_Randomized_Trial_on_the.6.aspx

Kløverpris, H. N., Kazer, S. W., Mjösberg, J., Mabuka, J. M., Wellmann, A., Ndhlovu, Z., … Leslie, A. (2016). Innate Lymphoid Cells Are Depleted Irreversibly during Acute HIV-1 Infection in the Absence of Viral Suppression. Immunity, 44(2), 391–405. https://doi.org/10.1016/j.immuni.2016.01.006

Reniers, G., Wamukoya, M., Urassa, M., Nyaguara, A., Nakiyingi-Miiro, J., Lutalo, T., … Zaba, B. (2016). Data Resource Profile: Network for Analysing Longitudinal Population-based HIV/AIDS data on Africa (ALPHA Network). International Journal of Epidemiology, 45(1), 83–93. https://doi.org/10.1093/ije/dyv343

Koofhethile, C. K., Ndhlovu, Z. M., Thobakgale-Tshabalala, C., Prado, J. G., Ismail, N., Mncube, Z., … Ndung’u, T. (2016). CD8 + T Cell Breadth and Ex Vivo Virus Inhibition Capacity Distinguish between Viremic Controllers with and without Protective HLA Class I Alleles. Journal of Virology, 90(15), 6818–6831. https://doi.org/10.1128/JVI.00276-16

Renju, J., Moshabela, M., McLean, E., Ddaaki, W., Skovdal, M., Odongo, F., … Wringe, A. (2017). ‘Side effects’ are ‘central effects’ that challenge retention in HIV treatment programmes in six sub-Saharan African countries: a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052971. https://doi.org/10.1136/sextrans-2016-052971

Koto, M. V., & Maharaj, P. (2016). Difficulties facing healthcare workers in the era of AIDS treatment in Lesotho. Sahara J, 13. https://doi.org/10.1080/17290376.2016.1179588

Rochat, T. J., Mitchell, J., Lubbe, A. M., Stein, A., Tomlinson, M., & Bland, R. M. (2017). Communication about HIV and death: Maternal reports of primary school-aged children’s questions after maternal HIV disclosure in rural South Africa. Social Science & Medicine, 172, 124–134. https://doi.org/10.1016/j.socscimed.2016.10.031

Lamprecht, D. A., Finin, P. M., Rahman, M. A., Cumming, B. M., Russell, S. L., Jonnala, S. R., … Steyn, A. J. C. (2016). Turning the respiratory flexibility of Mycobacterium tuberculosis against itself. Nature Communications, 7, 12393. https://doi.org/10.1038/ncomms12393

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Leitman, E. M., Hurst, J., Mori, M., Kublin, J., Ndung’u, T., Walker, B. D., … Goulder, P. J. R. (2016). Lower Viral Loads and Slower CD4+ T-Cell Count Decline in MRKAd5 HIV-1 Vaccinees Expressing Disease-Susceptible HLA-B*58:02. The Journal of Infectious Diseases, 214(3), 379–389. https://doi.org/10.1093/infdis/jiw093

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Madlala, P., Singh, R., An, P., Werner, L., Mlisana, K., Abdool Karim, S. S., … Ndung’u, T. (2016). Association of Polymorphisms in the Regulatory Region of the Cyclophilin a Gene (PPIA) with Gene Expression and HIV/AIDS Disease Progression. JAIDS Journal of Acquired Immune Deficiency Syndromes, 72(5). Retrieved from http://journals.lww.com/jaids/Fulltext/2016/08150/Association_of_Polymorphisms_in_the_Regulatory.1.aspx

Seo, H. S., Kim, H., Hwang, S. M., Hong, S. H., & Lee, I. Y. (2016). Predictors of job satisfaction and burnout among tuberculosis management nurses and physicians. Epidemiol Health, 38. https://doi.org/10.4178/epih.e2016008

Manasa, J., Danaviah, S., Lessells, R., Elshareef, M., Tanser, F., Wilkinson, E., … for the Southern African Treatment and Resistance Network. (2016). Increasing HIV-1 Drug Resistance Between 2010 and 2012 in Adults Participating in Population-Based HIV Surveillance in Rural KwaZulu-Natal, South Africa. AIDS Research and Human Retroviruses, 32(8), 763–769. https://doi.org/10.1089/aid.2015.0225

Shahmanesh, M., Schultze, A., Burns, F., Kirk, O., Lundgren, J., Mussini, C., … on behalf of EuroSIDA in EuroCOORD. (2016). The cardiovascular risk management for people living with HIV in Europe:  how well are we doing? AIDS, 30(16). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2016/10230/The_cardiovascular_risk_management_for_people.12.aspx

Manne-Goehler, J., Atun, R., Stokes, A., Goehler, A., Houinato, D., Houehanou, C., … Bärnighausen, T. (2016). Diabetes diagnosis and care in sub-Saharan Africa: pooled analysis of individual data from 12 countries. The Lancet Diabetes & Endocrinology, 4(11), 903–912. https://doi.org/10.1016/S2213-8587(16)30181-4

Simoni, Y., Fehlings, M., Kløverpris, H. N., McGovern, N., Koo, S.-L., Loh, C. Y., … Newell, E. W. (2017). Human Innate Lymphoid Cell Subsets Possess Tissue-Type Based Heterogeneity in Phenotype and Frequency. Immunity, 46(1), 148–161. https://doi.org/10.1016/j.immuni.2016.11.005

Maraba, N., Karat, A. S., McCarthy, K., Churchyard, G. J., Charalambous, S., Kahn, K., … Chihota, V. (2016). Verbal autopsy-assigned causes of death among adults being investigated for TB in South Africa. Transactions of The Royal Society of Tropical Medicine and Hygiene, 110(9), 510–516. https://doi.org/10.1093/trstmh/trw058

Skovdal, M., Wringe, A., Seeley, J., Renju, J., Paparini, S., Wamoyi, J., … Bonnington, O. (2017). Using theories of practice to understand HIV-positive persons varied engagement with HIV services: a qualitative study in six Sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052977

Marston, M., Nakiyingi-Miiro, J., Hosegood, V., Lutalo, T., Mtenga, B., Zaba, B., & on behalf of the ALPHA network. (2016). Measuring the Impact of Antiretroviral Therapy Roll-Out on Population Level Fertility in Three African Countries. PLOS ONE, 11(3), e0151877. https://doi.org/10.1371/journal.pone.0151877

Surolia, R., Karki, S., Wang, Z., Kulkarni, T., Li, F. J., Vohra, S., … Antony, V. B. (2016). Attenuated heme oxygenase-1 responses predispose the elderly to pulmonary nontuberculous mycobacterial infections. American Journal of Physiology - Lung Cellular and Molecular Physiology, 311(5), L928–L940. https://doi.org/10.1152/ajplung.00397.2015

Masum, A. K. M., Azad, M. A. K., Hoque, K. E., Beh, L.-. S., Wanke, P., & Arslan, Ö. (2016). Job satisfaction and intention to quit: an empirical analysis of nurses in Turkey. PeerJ, 4. https://doi.org/10.7717/peerj.1896 

Sutherland, K. A., Collier, D. A., Claiborne, D. T., Prince, J. L., Deymier, M. J., Goldstein, R. A., … Gupta, R. K. (2016). Wide variation in susceptibility of transmitted/founder HIV-1 subtype C Isolates to protease inhibitors and association with in vitro replication efficiency. Scientific Reports, 6(1). https://doi.org/10.1038/srep38153

Matthews, P. C., Carlson, J. M., Beloukas, A., Malik, A., Jooste, P., Ogwu, A., … Klenerman, P. (2016). HLA-A is a Predictor of Hepatitis B e Antigen Status in HIV-Positive African Adults. Journal of Infectious Diseases, 213(8), 1248–1252. https://doi.org/10.1093/infdis/jiv592

The EuroCoord-CHAIN-EPPICC joint project study group, Ngo-Giang-Huong, N., Wittkop, L., Judd, A., Reiss, P., Goetghebuer, T., … Lallemant, M. (2016). Prevalence and effect of pre-treatment drug resistance on the virological response to antiretroviral treatment initiated in HIV-infected children – a EuroCoord-CHAIN-EPPICC joint project. BMC Infectious Diseases, 16(1). https://doi.org/10.1186/s12879-016-1968-2

 McGovern, M. E., Herbst, K., Tanser, F., Mutevedzi, T., Canning, D., Gareta, D., … Bärnighausen, T. (2016). Do gifts increase consent to home-based HIV testing? A difference-in-differences study in rural KwaZulu-Natal, South Africa. International Journal of Epidemiology, 45(6), 2100–2109. https://doi.org/10.1093/ije/dyw122

The Subnational Estimates Working Group of the HIV Modelling Consortium. (2016). Evaluation of geospatial methods to generate subnational HIV prevalence estimates for

Mitchell, J. M., Rochat, T. J., Houle, B., Stein, A., Newell, M. L., & Bland, R. M. (2016). The effect of maternal and child early life factors on grade repetition among HIV exposed and unexposed children in rural KwaZulu-Natal, South Africa. Journal of Developmental Origins of Health and Disease, 7(02), 185–196. https://doi.org/10.1017/S2040174415007230

Tlou, B., Sartorius, B., & Tanser, F. (2016). Spatial-temporal dynamics and structural determinants of child and maternal mortality in a rural, high HIV burdened South African population, 2000–2014: a study protocol. BMJ Open, 6(7), e010013. https://doi.org/10.1136/bmjopen-2015-010013

Mitchell, J., Wight, M., Van Heerden, A., & Rochat, T. J. (2016). Intimate partner violence, HIV, and mental health: a triple epidemic of global proportions. International Review of Psychiatry, 28(5), 452–463. https://doi.org/10.1080/09540261.2016.1217829

Mlcochova, P., Sutherland, K. A., Watters, S. A., Bertoli, C., de Bruin, R. A., Rehwinkel, J., … Gupta, R. K. (2017). A G1?like state allows HIV?1 to bypass SAMHD1 restriction in macrophages. The EMBO Journal, 36(5), 604–616. https://doi.org/10.15252/embj.201696025

Treffry-Goatley, A., Lessells, R., Sykes, P., Bärnighausen, T., de Oliveira, T., Moletsane, R., & Seeley, J. (2016). Understanding Specific Contexts of Antiretroviral Therapy Adherence in Rural South Africa: A Thematic Analysis of Digital Stories from a Community with High HIV Prevalence. PLOS ONE, 11(2), e0148801. https://doi.org/10.1371/journal.pone.0148801

Moshabela, M., Bukenya, D., Darong, G., Wamoyi, J., McLean, E., Skovdal, M., … Wringe, A. (2017). Traditional healers, faith healers and medical practitioners: the contribution of medical pluralism to bottlenecks along the cascade of care for HIV/AIDS in Eastern and Southern Africa. Sexually Transmitted Infections, 93(Suppl 3), e052974. https://doi.org/10.1136/sextrans-2016-052974

 

van Rooyen, H., Essack, Z., Rochat, T., Wight, D., Knight, L., Bland, R., & Celum, C. (2016). Taking HIV Testing to Families: Designing a Family-Based Intervention to Facilitate HIV Testing, Disclosure, and Intergenerational Communication. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00154

Moshabela, M., Zuma, T., Orne-Gliemann, J., Iwuji, C., Larmarange, J., McGrath, N., & on behalf of the ANRS 12249 TasP Study Group. (2016). “It is better to die”: experiences of traditional health practitioners within the HIV treatment as prevention trial communities in rural South Africa (ANRS 12249 TasP trial). AIDS Care, 28(sup3), 24–32. https://doi.org/10.1080/09540121.2016.1181296

Vandormael, A. M., Boulware, D. R., Tanser, F. C., Bärnighausen, T. W., Stott, K. E., & de Oliveira, T. (2016). Brief Report: Virologic Monitoring Can Be a Cost-Effective Strategy to Diagnose Treatment Failure on First-Line ART. Journal of Acquired Immune Deficiency Syndromes (1999), 71(4), 462–466. https://doi.org/10.1097/QAI.0000000000000870

Moyo, S., Vandormael, A., Wilkinson, E., Engelbrecht, S., Gaseitsiwe, S., Kotokwe, K. P., … de Oliveira, T. (2016). Analysis of Viral Diversity in Relation to the Recency of HIV-1C Infection in Botswana. PLOS ONE, 11(8), e0160649. https://doi.org/10.1371/journal.pone.0160649

Wamoyi, J., Renju, J., Moshabela, M., McLean, E., Nyato, D., Mbata, D., … Wringe, A. (2017). Understanding the relationship between couple dynamics and engagement with HIV care services: insights from a qualitative study in Eastern and Southern Africa. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052976

Mthiyane, T., Pym, A., Dheda, K., Rustomjee, R., Reddy, T., & Manie, S. (2016). Longitudinal assessment of health related quality of life of HIV infected patients treated for tuberculosis and HIV in a high burden setting. Quality of Life Research, 25(12), 3067–3076. https://doi.org/10.1007/s11136-016-1332-4

Wang, H., Bhutta, Z. A., Coates, M. M., Coggeshall, M., Dandona, L., Diallo, K., … Murray, C. J. L. (2016). Global, regional, national, and selected subnational levels of stillbirths, neonatal, infant, and under-5 mortality, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1725–1774. https://doi.org/10.1016/S0140-6736(16)31575-6

Muenchhoff, M., Adland, E., Karimanzira, O., Crowther, C., Pace, M., Csala, A., … Goulder, P. (2016). Nonprogressing HIV-infected children share fundamental immunological features of nonpathogenic SIV infection. Science Translational Medicine, 8(358), 358ra125-358ra125. https://doi.org/10.1126/scitranslmed.aag1048

Wang, H., Naghavi, M., Allen, C., Barber, R. M., Bhutta, Z. A., Carter, A., … Murray, C. J. L. (2016). Global, regional, and national life expectancy, all-cause mortality, and cause-specific mortality for 249 causes of death, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1459–1544. https://doi.org/10.1016/S0140-6736(16)31012-1

Muenchhoff, M., Healy, M., Singh, R., Roider, J., Groll, A., Kindra, C., … Archary, M. (2017). Malnutrition in HIV-Infected Children Is an Indicator of Severe Disease with an Impaired Response to Antiretroviral Therapy. AIDS Research and Human Retroviruses. https://doi.org/10.1089/aid.2016.0261

Wang, H., Wolock, T. M., Carter, A., Nguyen, G., Kyu, H. H., Gakidou, E., … Murray, C. J. L. (2016). Estimates of global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2015: the Global Burden of Disease Study 2015. The Lancet HIV, 3(8), e361–e387. https://doi.org/10.1016/S2352-3018(16)30087-X

Naburi, H., Mujinja, P., Kilewo, C., Bärnighausen, T., Orsini, N., Manji, K., … Ekström, A. M. (2016). Predictors of Patient Dissatisfaction with Services for Prevention of Mother-To-Child Transmission of HIV in Dar es Salaam, Tanzania. PLOS ONE, 11(10), e0165121. https://doi.org/10.1371/journal.pone.0165121

Watters, S. A., Mlcochova, P., Maldarelli, F., Goonetilleke, N., Pillay, D., & Gupta, R. K. (2016). Sequential CCR5-Tropic HIV-1 Reactivation from Distinct Cellular Reservoirs following Perturbation of Elite Control. PLOS ONE, 11(7), e0158854. https://doi.org/10.1371/journal.pone.0158854

Napua, M., Pfeiffer, J. T., Chale, F., Hoek, R., Manuel, J., Michel, C., … Sherr, K. (2016). Option B+ in Mozambique: formative research findings for the design of a facility-level clustered randomized controlled trial to improve ART retention in antenatal care. J Acquir Immune Defic Syndr, 72. https://doi.org/10.1097/QAI.0000000000001061

White, E., Smit, E., Churchill, D., Collins, S., Booth, C., Tostevin, A., … Dunn, D. T. (2016). No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom. Journal of Infectious Diseases, 214(9), 1302–1308. https://doi.org/10.1093/infdis/jiw213

NCD Risk Factor Collaboration (NCD-RisC). (2016). A century of trends in adult human height. ELife, 5. https://doi.org/10.7554/eLife.13410

Wringe, A., Moshabela, M., Nyamukapa, C., Bukenya, D., Ondenge, K., Ddaaki, W., … Renju, J. (2017). HIV testing experiences and their implications for patient engagement with HIV care and treatment on the eve of ‘test and treat’: findings from a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052969. https://doi.org/10.1136/sextrans-2016-052969

Newell, M.-L., & Iwuji, C. (2016). HIV treatment as prevention: applicable in sub-Saharan Africa? The Lancet Infectious Diseases, 16(7), 754–755. https://doi.org/10.1016/S1473-3099(16)30057-3

 Yates, T. A., Tanser, F., & Abubakar, I. (2016). Plan Beta for tuberculosis: it’s time to think seriously about poorly ventilated congregate settings. The International Journal of Tuberculosis and Lung Disease, 20(1), 5–10. https://doi.org/10.5588/ijtld.15.0494

Noor, R. A., Geldsetzer, P., Bärnighausen, T., & Fawzi, W. (2016). Do countries rely on the World Health Organization for translating research findings into clinical guidelines? A case study. Globalization and Health, 12(1), 58. https://doi.org/10.1186/s12992-016-0196-2

Zuma, T., Wight, D., Rochat, T., & Moshabela, M. (2016). The role of traditional health practitioners in Rural KwaZulu-Natal, South Africa: generic or mode specific? BMC Complementary and Alternative Medicine16(1). https://doi.org/10.1186/s12906-016-1293-8

Oldenburg, C. E., Bärnighausen, T., Tanser, F., Iwuji, C. C., De Gruttola, V., Seage, G. R., … Harling, G. (2016a). Reply to Cohen et al. Clinical Infectious Diseases, 63(12), 1680.2-1680. https://doi.org/10.1093/cid/ciw674

Oldenburg, C. E., Bärnighausen, T., Tanser, F., Iwuji, C. C., De Gruttola, V., Seage, I., George R., … Harling, G. (2016b). Antiretroviral Therapy to Prevent HIV Acquisition in Serodiscordant Couples in a Hyperendemic Community in Rural South Africa. Clinical Infectious Diseases, 63(4), 548–554. https://doi.org/10.1093/cid/ciw335

Oldenburg, C. E., Moscoe, E., & Bärnighausen, T. (2016). Regression Discontinuity for Causal Effect Estimation in Epidemiology. Current Epidemiology Reports, 3(3), 233–241. https://doi.org/10.1007/s40471-016-0080-x

Oldenburg, C. E., Perez-Brumer, A. G., Reisner, S. L., Mayer, K. H., Mimiaga, M. J., Hatzenbuehler, M. L., & Bärnighausen, T. (2016). Human rights protections and HIV prevalence among MSM who sell sex: Cross-country comparisons from a systematic review and meta-analysis. Global Public Health, 1–12. https://doi.org/10.1080/17441692.2016.1149598

Ondenge, K., Renju, J., Bonnington, O., Moshabela, M., Wamoyi, J., Nyamukapa, C., … Skovdal, M. (2017). ‘I am treated well if I adhere to my HIV medication’: putting patient–provider interactions in context through insights from qualitative research in five sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3), e052973. https://doi.org/10.1136/sextrans-2016-052973

Orne-Gliemann, J., Zuma, T., Chikovore, J., Gillespie, N., Grant, M., Iwuji, C., … On Behalf of the TasP Study Group. (2016). Community perceptions of repeat HIV-testing: experiences of the ANRS 12249 Treatment as Prevention trial in rural South Africa. AIDS Care, 28(sup3), 14–23. https://doi.org/10.1080/09540121.2016.1164805

PANGEA_HIV Consortium, ICONIC Project, Yebra, G., Hodcroft, E. B., Ragonnet-Cronin, M. L., Pillay, D., … Kozlakidis, Z. (2016). Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic. Scientific Reports, 6(1). https://doi.org/10.1038/srep39489

Power, R. A., Parkhill, J., & de Oliveira, T. (2016). Microbial genome-wide association studies: lessons from human GWAS. Nature Reviews Genetics, 18(1), 41–50. https://doi.org/10.1038/nrg.2016.132

Power, R. A., Tansey, K. E., Buttenschøn, H. N., Cohen-Woods, S., Bigdeli, T., Hall, L. S., … Lewis, C. M. (2017). Genome-wide Association for Major Depression Through Age at Onset Stratification: Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium. Biological Psychiatry, 81(4), 325–335. https://doi.org/10.1016/j.biopsych.2016.05.010

Reimers, P., Israel-Ballard, K., Spies, L., Tanser, F., Thior, I., Scott Gordon, W., & Coutsoudis, A. (2016). A Protocol for a Cluster Randomized Trial on the Effect of a “feeding buddy” Program on adherence to the Prevention of Mother-To-Child-Transmission Guidelines in a Rural Area of KwaZulu-Natal, South Africa. JAIDS Journal of Acquired Immune Deficiency Syndromes, 72. Retrieved from http://journals.lww.com/jaids/Fulltext/2016/08011/A_Protocol_for_a_Cluster_Randomized_Trial_on_the.6.aspx

Reniers, G., Wamukoya, M., Urassa, M., Nyaguara, A., Nakiyingi-Miiro, J., Lutalo, T., … Zaba, B. (2016). Data Resource Profile: Network for Analysing Longitudinal Population-based HIV/AIDS data on Africa (ALPHA Network). International Journal of Epidemiology, 45(1), 83–93. https://doi.org/10.1093/ije/dyv343

Renju, J., Moshabela, M., McLean, E., Ddaaki, W., Skovdal, M., Odongo, F., … Wringe, A. (2017). ‘Side effects’ are ‘central effects’ that challenge retention in HIV treatment programmes in six sub-Saharan African countries: a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052971. https://doi.org/10.1136/sextrans-2016-052971

Rochat, T. J., Mitchell, J., Lubbe, A. M., Stein, A., Tomlinson, M., & Bland, R. M. (2017). Communication about HIV and death: Maternal reports of primary school-aged children’s questions after maternal HIV disclosure in rural South Africa. Social Science & Medicine, 172, 124–134. https://doi.org/10.1016/j.socscimed.2016.10.031

 Rochat, T. J., Mitchell, J., Stein, A., Mkwanazi, N. B., & Bland, R. M. (2016). The Amagugu Intervention: A Conceptual Framework for Increasing HIV Disclosure and Parent-Led Communication about Health among HIV-Infected Parents with HIV-Uninfected Primary School-Aged Children. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00183

Saini, V., Cumming, B. M., Guidry, L., Lamprecht, D. A., Adamson, J. H., Reddy, V. P., … Steyn, A. J. C. (2016). Ergothioneine Maintains Redox and Bioenergetic Homeostasis Essential for Drug Susceptibility and Virulence of Mycobacterium tuberculosis. Cell Reports, 14(3), 572–585. https://doi.org/10.1016/j.celrep.2015.12.056

Seo, H. S., Kim, H., Hwang, S. M., Hong, S. H., & Lee, I. Y. (2016). Predictors of job satisfaction and burnout among tuberculosis management nurses and physicians. Epidemiol Health, 38. https://doi.org/10.4178/epih.e2016008

Shahmanesh, M., Schultze, A., Burns, F., Kirk, O., Lundgren, J., Mussini, C., … on behalf of EuroSIDA in EuroCOORD. (2016). The cardiovascular risk management for people living with HIV in Europe:  how well are we doing? AIDS, 30(16). Retrieved from http://journals.lww.com/aidsonline/Fulltext/2016/10230/The_cardiovascular_risk_management_for_people.12.aspx

Simoni, Y., Fehlings, M., Kløverpris, H. N., McGovern, N., Koo, S.-L., Loh, C. Y., … Newell, E. W. (2017). Human Innate Lymphoid Cell Subsets Possess Tissue-Type Based Heterogeneity in Phenotype and Frequency. Immunity, 46(1), 148–161. https://doi.org/10.1016/j.immuni.2016.11.005

Skovdal, M., Wringe, A., Seeley, J., Renju, J., Paparini, S., Wamoyi, J., … Bonnington, O. (2017). Using theories of practice to understand HIV-positive persons varied engagement with HIV services: a qualitative study in six Sub-Saharan African countries. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052977

Surolia, R., Karki, S., Wang, Z., Kulkarni, T., Li, F. J., Vohra, S., … Antony, V. B. (2016). Attenuated heme oxygenase-1 responses predispose the elderly to pulmonary nontuberculous mycobacterial infections. American Journal of Physiology - Lung Cellular and Molecular Physiology, 311(5), L928–L940. https://doi.org/10.1152/ajplung.00397.2015

Sutherland, K. A., Collier, D. A., Claiborne, D. T., Prince, J. L., Deymier, M. J., Goldstein, R. A., … Gupta, R. K. (2016). Wide variation in susceptibility of transmitted/founder HIV-1 subtype C Isolates to protease inhibitors and association with in vitro replication efficiency. Scientific Reports, 6(1). https://doi.org/10.1038/srep38153

The EuroCoord-CHAIN-EPPICC joint project study group, Ngo-Giang-Huong, N., Wittkop, L., Judd, A., Reiss, P., Goetghebuer, T., … Lallemant, M. (2016). Prevalence and effect of pre-treatment drug resistance on the virological response to antiretroviral treatment initiated in HIV-infected children – a EuroCoord-CHAIN-EPPICC joint project. BMC Infectious Diseases, 16(1). https://doi.org/10.1186/s12879-016-1968-2

The Subnational Estimates Working Group of the HIV Modelling Consortium. (2016). Evaluation of geospatial methods to generate subnational HIV prevalence estimates for

Tlou, B., Sartorius, B., & Tanser, F. (2016). Spatial-temporal dynamics and structural determinants of child and maternal mortality in a rural, high HIV burdened South African population, 2000–2014: a study protocol. BMJ Open, 6(7), e010013. https://doi.org/10.1136/bmjopen-2015-010013

Treffry-Goatley, A., Lessells, R., Sykes, P., Bärnighausen, T., de Oliveira, T., Moletsane, R., & Seeley, J. (2016). Understanding Specific Contexts of Antiretroviral Therapy Adherence in Rural South Africa: A Thematic Analysis of Digital Stories from a Community with High HIV Prevalence. PLOS ONE, 11(2), e0148801. https://doi.org/10.1371/journal.pone.0148801

 

van Rooyen, H., Essack, Z., Rochat, T., Wight, D., Knight, L., Bland, R., & Celum, C. (2016). Taking HIV Testing to Families: Designing a Family-Based Intervention to Facilitate HIV Testing, Disclosure, and Intergenerational Communication. Frontiers in Public Health, 4. https://doi.org/10.3389/fpubh.2016.00154

Vandormael, A. M., Boulware, D. R., Tanser, F. C., Bärnighausen, T. W., Stott, K. E., & de Oliveira, T. (2016). Brief Report: Virologic Monitoring Can Be a Cost-Effective Strategy to Diagnose Treatment Failure on First-Line ART. Journal of Acquired Immune Deficiency Syndromes (1999), 71(4), 462–466. https://doi.org/10.1097/QAI.0000000000000870

Wamoyi, J., Renju, J., Moshabela, M., McLean, E., Nyato, D., Mbata, D., … Wringe, A. (2017). Understanding the relationship between couple dynamics and engagement with HIV care services: insights from a qualitative study in Eastern and Southern Africa. Sexually Transmitted Infections, 93(Suppl 3). https://doi.org/10.1136/sextrans-2016-052976

Wang, H., Bhutta, Z. A., Coates, M. M., Coggeshall, M., Dandona, L., Diallo, K., … Murray, C. J. L. (2016). Global, regional, national, and selected subnational levels of stillbirths, neonatal, infant, and under-5 mortality, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1725–1774. https://doi.org/10.1016/S0140-6736(16)31575-6

Wang, H., Naghavi, M., Allen, C., Barber, R. M., Bhutta, Z. A., Carter, A., … Murray, C. J. L. (2016). Global, regional, and national life expectancy, all-cause mortality, and cause-specific mortality for 249 causes of death, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. The Lancet, 388(10053), 1459–1544. https://doi.org/10.1016/S0140-6736(16)31012-1

Wang, H., Wolock, T. M., Carter, A., Nguyen, G., Kyu, H. H., Gakidou, E., … Murray, C. J. L. (2016). Estimates of global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2015: the Global Burden of Disease Study 2015. The Lancet HIV, 3(8), e361–e387. https://doi.org/10.1016/S2352-3018(16)30087-X

Watters, S. A., Mlcochova, P., Maldarelli, F., Goonetilleke, N., Pillay, D., & Gupta, R. K. (2016). Sequential CCR5-Tropic HIV-1 Reactivation from Distinct Cellular Reservoirs following Perturbation of Elite Control. PLOS ONE, 11(7), e0158854. https://doi.org/10.1371/journal.pone.0158854

White, E., Smit, E., Churchill, D., Collins, S., Booth, C., Tostevin, A., … Dunn, D. T. (2016). No Evidence That HIV-1 Subtype C Infection Compromises the Efficacy of Tenofovir-Containing Regimens: Cohort Study in the United Kingdom. Journal of Infectious Diseases, 214(9), 1302–1308. https://doi.org/10.1093/infdis/jiw213

Wringe, A., Moshabela, M., Nyamukapa, C., Bukenya, D., Ondenge, K., Ddaaki, W., … Renju, J. (2017). HIV testing experiences and their implications for patient engagement with HIV care and treatment on the eve of ‘test and treat’: findings from a multicountry qualitative study. Sexually Transmitted Infections, 93(Suppl 3), e052969. https://doi.org/10.1136/sextrans-2016-052969

 Yates, T. A., Tanser, F., & Abubakar, I. (2016). Plan Beta for tuberculosis: it’s time to think seriously about poorly ventilated congregate settings. The International Journal of Tuberculosis and Lung Disease, 20(1), 5–10. https://doi.org/10.5588/ijtld.15.0494

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